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Opportunity from Disruption: HSLS Experiments with New Methods of Instruction

Since April 2020, the HSLS instruction team has held bi-weekly meetings to introduce new tools, share challenges, and make recommendations. We have had the opportunity to experiment with new instructional methods and assess which practices we will permanently adopt going forward.

For example, we recently licensed LibWizard from Springshare to create self-paced tutorials on topics like Getting Started with EndNote. Instructors have used active learning techniques like polling, short discussions via TopHat, and Zoom Breakout rooms to increase engagement. Other instructors provide directions for detailed hands-on activities that can be done during or after class.

The HSLS MolBio team has taken advantage of Zoom Webinars by recording each of their classes and making them available on the comprehensive MolBio Workshop/Class Guides. Many instructors have leaned into LibGuides as complements to HSLS classes. Providing a LibGuide where course materials can be hosted, links posted, and class recordings stored allows us to keep any materials shared fresh, up to date, and accessible. For an excellent example, check out the Gene Regulation Guide. Continue reading

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New Oculus Quest Virtual Reality System at Falk Library

Med student VR in operating room

HSLS is pleased to announce that three new Oculus Quest virtual reality (VR) systems are available to borrow at Falk Library! In 2018, HSLS introduced its VR space, which features study aids for health sciences students and medical training simulations. Since then, VR technology has advanced in leaps and bounds, and the new Oculus systems deliver a much-needed update to the library’s VR services.

If you are new to VR, the Oculus Quest is a streamlined system with a low learning curve that provides a great introduction to virtual reality. If you have used VR in the past, the Oculus Quest’s advanced graphics and responsive touch controllers offer a unique, lag-free playing experience that is still worth checking out.

Most exciting is the wide range of apps that users can explore on the updated headsets. Various medical education apps are available, including virtual anatomy atlases and programs that visualize 3D images from medical scans. Interactive clinical simulations like Total Knee Replacement Surgery Simulation and PST VR: Primary Surgical Treatment are also available. Continue reading

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Two High-Quality Teaching Tools: AccessMedicine’s Focused Anatomy Modules and The Infographic Guide to Medicine

AccessMedicine is an authoritative online resource with dozens of core medical textbooks, such as Harrison’s Principles of Internal Medicine, 20th edition, and Goodman & Gilman’s The Pharmacological Basis of Therapeutics, 13th edition, as well as various quick reference tools, and a number of valuable multimedia resources.

Two especially useful multimedia teaching resources include:

Focused Anatomy Modules

The recently added “Focused Anatomy Modules” includes over 300 anatomy modules designed to offer an extensive anatomical review. Within these modules are animations depicting how various diseases and illnesses manifest themselves throughout the body. A brief explanation accompanies each module with a link to further reading. Continue reading

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Treasures from the Rare Book Room: Dr. Hitchcock’s Teeth Almanac for 1844

Dr. Hitchcock's Teeth Almanac for the 1844, Boston: Saxton, Peirce & Co. William White & HP Lewis, Printers.Today, the almanac is no longer the important and popular resource it once was in most households. It appeared in America at the end of the 17th century and its popularity was second only to the Bible. Almanacs offered lists of current events, advice, and weather prognostics tailored to a specific audience, such as that of the Farmer’s Almanac, and served as a basic home reference, especially for those in isolated households, helping to keep track of passing time. Dr. David Keyes Hitchcock started publishing almanacs annually around 1839, which happened years before printed calendars were invented (1870), and before there were any standards (1883)* by which to set clocks and watches.

Dr. Hitchcock (1813-1895) was a surgeon dentist with a practice in Boston at 98 Court Street. He was the author of Preservation of the Teeth: A Family Guide, published in Boston in 1840. Falk Library has Dr. Hitchcock’s teeth almanacs for the years 1843 and 1844. The first of his dental almanacs includes standard pages with an astronomical calendar and advice on the maintenance of teeth, brushing, filling cavities, considering artificial teeth as a replacement for lost ones, and determining the right time and motives for tooth extraction. Continue reading

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Featured Workshop: Finding Information in Support of Health Equity Research

HSLS offers classes in a wide array of subjects—citation management, database searching, bibliographic management, and more! You can quickly view all Upcoming Classes and Events or sign up to receive the weekly Upcoming HSLS Classes and Workshops email.

Featured workshop of the month: Finding Information in Support of Health Equity Research

Tuesday, November 16, 2021, 10–11 a.m.

Register for this virtual workshop*

It can be complicated to find information in support of health equity research in scholarly databases due to outdated keywords, complex controlled vocabulary, changes in the language used by researchers, and bias in classification. Participants of this class will gain the resources to find and more critically evaluate research that involves race, populations, disparities, and other health equity concepts.

During this class, we discuss strategies and resources for researching health disparities and social determinants of health. This workshop is ideal for those with some database searching experience who want to learn the specific skills needed to search for concepts related to health equity research. Continue reading

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HSLS Staff News

The HSLS Staff News section includes recent HSLS presentations, publications, staff changes, staff promotions, degrees earned, etc.

Names in bold are HSLS-affiliated

News

Congratulations to Kirsten Crowhurst on her promotion to Program Innovation Strategist for the NNLM All of Us Training and Education Center (TEC). Kirsten joined the TEC in 2018 as Program Manager and quickly became indispensable to the team for her creativity in program development and passion for public health. In her new role, Kirsten will be leading the TEC’s “Idea Factory,” which focuses on incubating novel and innovative health programs to support libraries and community-based organizations. We are also welcoming Tess Wilson as the new Program Manager. She will work closely with Kirsten and oversee the TEC’s Expert Partners Program. Tess joined HSLS as an Engagement Coordinator in 2019 with the former NNLM Middle Atlantic Region (MAR), and she brings a wealth of experience in library outreach and environmental health to the team.

Julia Dahm, Melissa Ratajeski, and Rose Turner have been appointed HSLS Assistant Directors. Please refer to the “New Leadership within HSLS” article in this issue for details.

Stephen Gabrielson has been promoted to Scholarly Communication Librarian (Librarian II). This promotion emphasizes a focus on the growing demand for scholarly communication services. In this position, Gabrielson will have responsibility for initiatives focusing on communication of research impact, responsible use of metrics, strategic dissemination of research outputs, and open access publishing and policy compliance. Continue reading

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Looking for Databases beyond PubMed

Sometimes a clinical or research topic is more specialized than general medical sciences. Searching a database beyond PubMed may help discover relevant articles. The Pitt libraries subscribe to an array of databases that cover specialized subjects or health sciences fields. All of the databases below, and more, are available from the HSLS listing of Databases A-Z (you’ll be prompted for Pitt Passport if working remotely). Here are some highlights:

APA PsycINFO: Mental, social and behavioral health sciences inclusion, including psychology and psychiatry, make this resource a good choice for sociological, psych, or addiction queries. It encompasses both journals and books, along with dissertations.

EMBASE: This European-oriented database includes all disciplines of medical and biomedical sciences, but it excels at drug questions. It includes granular indexing for drugs with more drug-related controlled vocabulary terms using EMBASE’s EMTREE thesaurus. “Triplet chemotherapy,” “drug craving,” and “drug comparison” are three examples of drug-specific vocabulary terms not found in PubMed’s MeSH vocabulary. In addition, this would be a good source for conference abstracts and drugs used abroad.

Global Health: An intriguing blend of public health, tropical disease and infectious disease sources. It considers community health and nutrition, yet also includes parasitology, medicinal and poisonous plants, and more. Continue reading

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Changing Resources: Transitioning from Scopus to Web of Science

The University libraries will be ending their subscription to the Scopus database on December 31, 2021. This decision was made based on usage statistics and cost-per-use metrics.

Web of Science (WoS), the authoritative and continually updated citation database, is comparable to Scopus. WoS allows you to track prior research and monitor current developments, see who is citing your work, and measure the influence of colleagues’ work.

WoS consists of six databases:

  • Web of Science Core Collection (1945-present)
  • BIOSIS Previews (1969-present)
  • KCI-Korean Journal Database (1980-present)
  • MEDLINE® (1950-present)
  • Russian Science Citation Index (2005-present)
  • SciELO (2002-present)

You can also search all six databases at one time.

Do you want to learn more about what Web of Science offers?

Continue reading

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Public Availability of COVID-19 Data

COVID-19 Global Pandemic affecting the world
The ability to view the number of cases, hospitalizations, and deaths from COVID-19 has decidedly improved since the first U.S. cases were diagnosed. Non-governmental organizations initially tasked themselves with providing COVID data access using county, state, and U.S. maps (Coronavirus Tracking Center from Johns Hopkins). The COVID Racial Data Tracker was developed a little later to highlight the increased risk of COVID incidence and mortality for people of color.

In January 2021, the U.S. Centers for Disease Control and Prevention (CDC) released the new public-facing COVID Data Tracker, providing access to the most current information, incorporating daily updates, and showing county, state, and national levels using maps with data download options.

The county level map data includes the level of community transmission, cases, deaths, mortality, and more. You can also view a 20-day time-lapse map of community-level transmission by county. The maps can be a little misleading: Nebraska stopped sending COVID data in July; other states reduced the number of weekly reports sent; and several fail to include information such as where patients live, whether they were hospitalized or survived, or even what their race and/or ethnicity is. Consequently, the data may appear in state estimates on the COVID Data Tracker but are not available for other estimates. Continue reading

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Featured Workshop: Wikipedia for Health Sciences Students

HSLS offers classes in a wide array of subjects—citation management, database searching, bibliographic management, and more! You can quickly view all Upcoming Classes and Events or sign up to receive the weekly Upcoming HSLS Classes and Workshops email.

Our upcoming featured workshop is Wikipedia for Health Sciences Students. The first workshop in this two-part series will take place on Tuesday, November 2, 2021, 2-3 p.m. The second workshop will take place on Wednesday, November 17, 2021, 1-2:30 p.m.

Register for both sessions*:

Wikipedia is an online encyclopedia known for its abundance of information on a vast range of topics, including biomedical subjects. A vital component of Wikipedia is the community of volunteers who help to create and improve content through a model of open collaboration. Since Wikipedia can be edited by anyone at any time, it has gained a reputation for being an unreliable source of information.

Despite widespread skepticism of its value, studies have shown that the quality of information on Wikipedia is generally similar to other encyclopedias. Further, its health information is extremely widely used by the public, as well as students and professionals: Wikipedia’s biomedical articles are accessed 7 billion times per year, and over 90% of medical students and 50-70% of physicians report using these articles. Continue reading

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HSLS Staff News

The HSLS Staff News section includes recent HSLS presentations, publications, staff changes, staff promotions, degrees earned, etc.

Names in bold are HSLS-affiliated

Publications

Ansuman Chattopadhyay, Assistant Director for Molecular Biology Information Services:

Liu Q, Bhuiyan MIH, Liu R, Song S, Begum G, Young CB, Foley LM, Chen F, Hitchens TK, Cao G, Chattopadhyay A, He L, Sun D. Attenuating vascular stenosis-induced astrogliosis preserves white matter integrity and cognitive function. J Neuroinflammation. 2021 Aug 28;18(1):187. doi: 10.1186/s12974-021-02234-8. PMID: 34454529; PMCID: PMC8403348.

Zheng W, D’Aiuto L, Demers MJ, Muralidaran V, Wood JA, Wesesky M, Chattopadhyay A, Nimgaonkar VL. Insights into bioinformatic approaches for repurposing compounds as anti-viral drugs. Antivir Chem Chemother. 2021 Jan-Dec;29:20402066211036822. doi: 10.1177/20402066211036822. PMID: 34463534; PMCID: PMC8411619.

Kelsey Cowles, Research and Instruction Librarian:

Cowles K, Glusker A, Gogan A, Lillich A, Sheppard M, Vitale E, Waltman L, Wilson T, NNLM MAR Community Engagement Coordinator, and Wilson AJ. “Crowdsourcing and Collaboration: Academic Libraries as Partners in NNLM’s #CiteNLM Wikipedia Edit-a-Thons.” In Wikipedia and Academic Libraries: A Global Project, edited by Bridges LM, Pun R, and Arteaga R, 2021. Continue reading

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HSLS Liaison Librarians

Liaison librarians are integrated into the departments and programs in the schools of the health sciences and are your link to the many services and resources of the Health Sciences Library System. Liaisons can provide support by designing course-integrated instructional sessions that teach research skills specific to a course or an assignment; customizing classes or presentations on timely, relevant topics such as data management or scholarly communication; collaborating on research projects; and participating on systematic review teams and grant projects. Continue reading

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Take Your Data Practices from Good to Best with HSLS Data Services

The HSLS Data Services team is thrilled that Pitt has declared 2021-22 to be the Year of Data and Society, because for us, every day is a day for data. Whether you are embarking on your first research project or have dozens of completed studies under your belt, we are here to help you improve the efficiency and reliability of your data-handling workflows at every step in the research process. We offer consultations, classes, and customized trainings in the following areas:

Research data management

Organizing files, writing documentation, and safely storing datasets are key practices for working with data effectively. They are also required discussion items for data management plans, which will be mandated in all NIH grant applications after January 2023. (Read the official NIH notice.) We recommend our Introduction to Research Data Management workshops especially for new graduate students to set themselves up with good habits from the start, but in-depth consultations are available for any lab, research group, or individual. Continue reading

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What Can HSLS MBIS Do for You?

The HSLS Molecular Biology Information Service (MBIS) has a mission: Providing bioinformatics resources via software procurement, implementation, and training to assist biomedical scientists with solving their research questions. Also referred to as “HSLS MolBio,” our service has supported Pitt researchers since 2002. How do we do this?

HSLS MolBio follows a four-facet approach with the following goals:

  1. Identify, procure, and implement commercially licensed bioinformatics software.
  2. Teach hands-on workshops on bioinformatics topics such as bulk/single cell RNA-Seq data analysis, pathway enrichment analysis, and gene expression visualization, using software with a point-and-click graphical user interface that does not require programming experience.
  3. Provide in-person and email consultations on software/databases.
  4. Maintain a web portal providing overall guidance on the access and use of bioinformatics resources and MBIS-created web tools.

Continue reading