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New to Borrow: Powerful Laptops Loaded with Bioinformatics Software

Do you need to analyze NGS data but don’t have the computational power on your laptop or desktop to run it locally? The HSLS Molecular Biology Information Service (MBIS) and HSLS Technology have loaded two laptops with all current MBIS software (see figures below). They can be borrowed from the HSLS Technology Help Desk with a valid Pitt ID for use both within and outside of the library. The laptops can be checked out for four hours and are renewable online, but must be returned before the library closes.

Laptop specifications:

  • Model: Dell Precision 7710
  • Monitor: 17.3” (3840 x 2160 @ 60Hz)
  • OS: Windows 10 Pro 64-bit
  • Processor: Intel Core i7 6920HQ @ 2.90GHz
  • Memory: 32GB
  • Video card: 4095MB Nvidia Quadro M5000M
  • SDD: 953GB PM961 NVMe SAMSUNG 1024GB
  • Battery life: ~3 hours

Contact the HSLS Molecular Biology Information Service with any questions.

List of software provided by HSLS MolBio

~Carrie Iwema

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Enter the Art on the Brain Coloring Contest

Top view and close up of desktop with creative brain sketch. Brainstorm and art conceptWant to de-stress and win a neuro-themed prize? You’re invited to compete in a ‘brainy’ coloring contest—one of the related activities surrounding the ongoing Art on the Brain exhibit at Falk Library.

Why a coloring contest? Coloring allows anyone to be creative, and there’s no right or wrong technique. And despite what you learned as a child, you can even feel free to color outside the lines! Plus, briefly moving the focus of your busy brain away from your screens to engage in the simple act of coloring can be relaxing, fun, or even meditative. Continue reading

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Public Health Informationist Barbara Folb Retired from HSLS

Barbara Folb

At the end of April, Barbara Folb, Public Health Informationist, retired after a long, successful career at HSLS.

Folb is the third of four generations with a connection to Pitt. Her great uncle, Max Lauffer, was the founding chair of the Department of Biophysics at Pitt. Her mother graduated from Pitt with a degree in Spanish, Folb received an MLS and an MPH, and her daughter earned an MLIS degree. Continue reading

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Finals Week De-Stress Activities at HSLS

It’s that time again—finals week—and the library is bursting with students studying, writing papers, and finishing research projects. HSLS called upon our furry, four-legged friends to give health sciences students a stress-free study break. Over 80 students filled our conference room with smiles and laughter while enjoying the company of Mosie and Hava, both Portuguese water dogs, and Blue, a golden retriever. HSLS would like to thank Rick Oberndorf and Melissa Saul, the pet handlers who volunteered their time to this effort.

With a focus on creating, a second study break allowed students to dabble in art activities related to the brain. Attendees chose from a variety of paint, playdoh, yarn, beads, pipe cleaners, and straws to create art pieces such as inkblots and crafty neurons. Continue reading

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HSLS Staff News

The HSLS Staff News section includes recent HSLS presentations, publications, staff changes, staff promotions, degrees earned, etc.

Names in bold are HSLS-affiliated

Datasets

Melissa Ratajeski, Coordinator of Data Management Services, Emily Mazure, UNC Health Sciences at MAHEC, Karen Gau, Tompkins-McCaw Library for the Health Sciences, Virginia Commonwealth University, et al., have deposited “Differences between the PubMed Record and Full-Text Methods Section in In-Vivo Animal Research Articles” into the public data repository, figshare. The dataset is also accessible in the Pitt Data Catalog.

Publications

Ansuman Chattopadhyay, Assistant Director for Molecular Biology Information Service, Carrie L. Iwema, Coordinator of Basic Science Services, Barbara A. Epstein, HSLS Director, Adrian Lee, Professor and Pittsburgh Foundation Chair in Precision Medicine, and Arthur S. Levine, Senior Vice Chancellor for the Health Sciences and John and Gertrude Petersen Dean of the University of Pittsburgh School of Medicine, published “Molecular Biology Information Service: An Innovative Medical Library-Based Bioinformatics Support Service for Biomedical Researchers” in Briefings in Bioinformatics, April 5, 2019. Continue reading

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Classes for May 2019

Painless PubMed, Thursday, May 9, 12–1 p.m.

Infographics: Sharing Information Visually, Monday, May 13, 10–11 a.m.

Introduction to Image Editing: Adobe Photoshop and Illustrator, Tuesday, May 14, 2–3 p.m.

Bulk RNA-Seq, Wednesday, May 15, 1–4 p.m.

Introduction to Adobe Illustrator for Diagrams, Monday, May 20, 10–11:30 a.m.

Painless PubMed, Tuesday, May 21, 8–9 a.m.

Crafting a Data Management Plan , Tuesday, May 21, 12–1 p.m.

Basic EndNote, Wednesday, May 22, 3–4 p.m.

Graphic Design with Canva, Wednesday, May 29, 2–3 p.m.

The Western Pennsylvania Regional Data Center: Making Public Information Easier to Find and Use, Thursday, May 30, 10–10:30 a.m.

Continue reading

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Neuro-Inspired Art to Inspire All

Art on the Brain is a unique exhibit on display at Falk Library. The centerpiece of the exhibit is six awe-inspiring works by artist and neuroscientist, Dr. Greg Dunn. The artworks are titled: Self Reflected (illuminated micro etching), Visual Cortex (custom designed), Olfactory Bulb, Synaptogenesis, Basket & Pyramidals, and Retina in Inks. Dunn visits HSLS for the opening reception and lecture titled, “Self Reflected: Deeply Fusing Art and Science to Create the World’s Most Complex Artistic Depiction of the Human Brain,” on April 3 from 2-4 p.m. in Scaife Hall. These works will remain in the library on permanent display after the exhibit.

On the library’s upper floor, Dunn’s artwork is accompanied by a creativity relaxation station. Just in time for some finals week relief, visitors are encouraged to build a brainy puzzle, use an app to create digital art, or color your own brain images. Does all of the beautiful art have you feeling inspired? Compete in our coloring contest to win a cool neuro-themed prize!

The exhibit also extends to include locally produced images from Pitt’s Center for Biologic Imaging (CBI). CBI’s mosaic posters are prominent in the main floor study area, while journal covers and smaller prints are viewable in the display cases of the main hallway of the library. Continue reading

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New Liaison, New Services

Search back issues of the HSLS Update for “liaison” and you will find many articles that report on liaison librarians’ activities and listing the services they provide. Liaisons either serve a health sciences school, or they concentrate on meeting an important information need such as scholarly communications or molecular biology bioinformatics that cuts across schools. The opportunity to combine librarianship with deep subject knowledge and to participate in long term collaborative projects with faculty, staff, and students makes liaison librarianship a rewarding career choice. A good liaison enjoys teaching information skills and the intellectual challenge of providing advanced information services such as systematic review searching.

At the end of April, Barbara Folb will retire, and Helena VonVille will be the liaison to the Graduate School of Public Health. Barbara was the first liaison to the school to hold an MPH in addition to a library degree. She established a strong systematic review search support service for the school, and promoted the informationist model of liaison librarianship, maintaining an office in the school, and participating in collaborative projects with the faculty as well as teaching and consultation.

Continue reading

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Tell Us Your Story: Outcomes from Data Sharing

During Love Data Week, HSLS Data Services gathered stories from health sciences researchers to better understand the “benefits or unforeseen outcomes” experienced from data sharing.

The paraphrased stories below illustrate the importance of data security and thoughtful data management.

There is the expectation that one’s identity would remain 100% confidential when participating in a research study. A breach in data security, identified during a Google search, made one research participant hesitant about sharing any personal data in future studies. Continue reading

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Surface Pros Featuring Adobe Creative Cloud Now Available at Falk Library

Are you a biomedical graduate student who needs to draw a gene regulation pathway for an upcoming poster presentation, but you don’t have the right software to use? Perhaps you’re a medical student editing a video project, and the tools in Windows Movie Maker feel a little outdated. Maybe you’re simply a student in the health sciences who likes to draw, edit photos, or create other forms of digital media, and you’re ready to elevate your technique past the free software you can find online.

To aid these creative projects and more, Falk Library now has Surface Pros available to borrow that are equipped with full versions of Adobe Creative Cloud 2018. With a touchscreen, removable keyboard, and adjustable kickstand, the Surface Pro is a fully functional Windows laptop. When combined with the Surface Pen (also available to borrow at Falk Library), the Surface Pro also converts into a pressure-sensitive drawing tablet. Its responsive touch screen, with palm rejection, makes it an ideal tablet to run powerful Adobe programs, including Illustrator and Photoshop. To see a full list of software offered on HSLS devices, including details on the Adobe Creative Cloud programs offered on the Surface Pro, visit our Available Software website.

Interested, but not familiar with Adobe Creative Cloud? HSLS offers an Introduction to Image Editing class along with more detailed Illustrator and Photoshop classes; scheduling information is available online. If you’re looking for the latest Adobe software but prefer to use a traditional laptop, a limited number of circulating PCs and Macs also have Adobe Creative Cloud installed—inquire at the Technology Help Desk.

Surface Pros, Surface Pens, and laptops are available to borrow now from the Technology Help Desk with a valid Pitt ID. For more information on available technology and borrowing procedures, please contact the Technology Help Desk.

~Julia Reese

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The TEC – A Year in Review

Jennifer Jones
Executive Director, Training and Education Center, All of Us Research Program, National Library of Medicine

The National Library of Medicine Training and Education Center (TEC) for the All of Us Research Program is celebrating its first year at HSLS! The TEC is the central repository for educational content and trainings related to the program. Our goal is to leverage resources, highlight expertise, and create accessible products for a variety of target audiences, including All of Us Research Program participants, All of Us consortium members, researchers, health professionals, citizen scientists, and for general consumer health. The TEC uses a Team Science framework to collaborate with NLM staff and All of Us leadership to determine priorities and best practices.

Over the past year the TEC has focused on creating a solid and sustainable infrastructure, which includes operationalizing policies, procedures, and a program logic model, creating and populating an online Training and Educational Platform, creating an Expert Partners Database, determining our participant engagement strategic plan, and launching multiple SharePoint 365 project sites for internal project management and external collaboration with project stakeholders. The TEC implemented a 4-step instructional design process (consult, prototype, build, and go live) for the consistent creation, delivery, and evaluation of all TEC deliverables. All TEC products meet federal standards to be 508-compliant with language and accessibility, with an upcoming goal for all participant engagement materials to be available in Spanish. Continue reading

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Responsible Literature Searching Module

With the help of Google, we’re used to getting the search results we want right away. It’s easy to parse whether a search engine has given you what you need if you’re looking for a quick dinner recipe or Pitt’s current academic calendar. However, searching for biomedical literature isn’t as easy, and incorrect search terms, incomplete searches, or using the wrong database could lead to inadequate results. That matters a lot, especially when designing studies involving human subjects. With an ever-increasing amount of biomedical literature and so many ways to find it, how can researchers be sure they aren’t missing anything?

HSLS is here to help! We have released an updated version of the Responsible Literature Searching module for clinicians, scientists, and anyone looking to improve their biomedical literature searching skills. The module provides guidelines to follow in order to search the literature in a responsible manner, especially when working with human subjects. Continue reading

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VR @ HSLS

Are you interested in virtual reality (VR) simulations? Join Dr. Bill McIvor, Professor of Anesthesiology, for HSLS-based VR “office hours.” Starting in April, Dr. McIvor will be available to mentor students and faculty interested in learning more about VR-based technology. Not just a solitary endeavor, VR simulations offer a great way for health sciences students to work interprofessionally with one another within complex real life scenarios such as the care of acutely unstable patients.

Dr. McIvor’s HSLS VR office hours:

Wednesday, April 3 5-7 p.m.
Thursday, April 4 3-5 p.m.
Monday, April 8 3-5 p.m.
Tuesday, April 9 5-7 p.m.
Tuesday, April 16 3-5 p.m.
Wednesday, April 17 5-7 p.m.
Thursday, April 25 2-4 p.m. and 6-8 p.m.
Friday, April 30 3-5 p.m.

For more information, please see the Virtual Reality at HSLS LibGuide.

~Fran Yarger

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Treasures from the Rare Book Collection: Master of Trusses

Book - Juville Bandage HerniairJean Juville, identified in French dictionaries and catalogs as Juville, hernia expert, was an 18th century surgeon educated at the Royal College of Surgery in Paris, and a truss maker.

Before publishing his principal work on hernia bandages (Traité des bandages herniaires, Paris 1786), he already had forty years of experience practicing surgery, studying and perfecting these instruments. He presented the bandages of his invention to the Academy of Sciences in 1773, and published extensively on the subject in the Journal de Medicine in 1775, 1777, and 1783. His name was well known and respected. There was no author writing about hernia bandages in the late 18th and early 19th century who would not refer to or talk about this Parisian truss maker. Juville’s treatise is considered the best 18th century work on the subject. Continue reading