Git and GitHub are most widely recognized as tools for software developers, but they can also be valuable tools for modern biomedical research. These platforms enable researchers to manage code and data efficiently while fostering collaboration across teams and institutions. With built-in version control and sharing capabilities, they ensure reproducibility and transparency.
How Git and GitHub Can Support Your Research
- Reproducibility: Every change to your analysis scripts and datasets is tracked, creating a transparent history that supports reproducible science.
- Collaboration: Work together seamlessly by sharing repositories with colleagues worldwide. Multiple contributors can edit, review, and merge updates without losing progress.
- Data & Code Sharing: Host scripts and data files, documentation, and workflows in one place, making it easier for teams to access, share, and contribute.
- Open Science: Publish repositories publicly to accelerate discovery and promote transparency in research practices.
Getting Started with Git and GitHub
- Install Git: Use resources like software carpentry for installation of Git.
- Create a GitHub Account: Sign up for GitHub locally or contact Pitt Digital to request access to a GitHub Enterprise account.
- Collaborate: Invite team members, manage permissions, and use pull requests for code review.
Upcoming HSLS MolBio Workshop
The HSLS Molecular Biology Information Service has created a new workshop to help Pitt researchers get started with Git and GitHub. Join us on Wednesday, February 18, from 1 to 3 p.m., to learn about using Git and GitHub for data management, collaborative projects, and engaging with the global research community. The workshop will also cover how to track revisions and manage code histories to ensure computational reproducibility.
Register for Git and GitHub for Research*
*HSLS classes are open to University of Pittsburgh faculty, staff, and students, as well as UPMC residents and fellows.
~Sri Chaparala