Wednesday, April 17, 2024, 1-4 p.m.
Hybrid session: Attend online or in person in the Falk Library Classroom
Register for Integrating ChIP-Seq/ATAC-Seq and Gene Expression Data: A Comprehensive Analysis using Partek Flow
This beginner-friendly workshop is on integrated analysis of ChipSeq/ATAC Seq with gene expression data using HSLS-licensed Partek Flow software.
Upon completing this class, you should be able to:
- import ChIPSeq/ATACSeq reads from an NCBI GEO dataset
- align the reads to a reference genome
- identify, annotate and visualize the peaks from aligned ChIP-Seq /ATAC Seq data
- identify enriched known/novel sequence motifs
- integrate with gene expression data
- find enriched gene sets and visualize the results
Target Audience: Experimental biologists seeking to learn how to analyze epigenomic or gene expression data generated through experiments or retrieved from a publication or a repository such as GEO. The software covered in the workshop operates through a user-friendly, point-and-click graphical user interface, so neither computer programming experience nor familiarity with the command-line interface is required.