- WHAT: Spatial Transcriptomics & CITE-Seq Data Analysis w/ Partek Flow
- WHEN: April 27th, 10 a.m.-1 p.m.
- WHERE: Online; instructions upon registration
- WHO: Sri Chaparala
- HOW: Register for the 4/27 workshop
In this workshop, we will cover the advanced single-cell RNASeq analysis techniques such as CITE Seq and Spatial Transcriptomics.
Participants will learn how to
- import 10x Genomics CITE-Seq and Spatial Transcriptomics (Visium) data to Partek Flow
- merge expression data with histological information
- filter and normalize the data
- generate PCA, t-SNE, and UMAP plots to visualize data
- identify cell populations, biomarkers, and compute differential gene expressions between two cell populations
Contact the HSLS Molecular Biology Information Service with any questions.
(Photo by Shot by Cerqueira on Unsplash)