• WHAT: GEO Data Mining & Submission
  • WHEN: January 26th, 10am-1pm
  • WHERE: In-Person or Online; instructions upon registration
  • WHO: Sri Chaparala & Ansuman Chattopadhyay
  • HOW: Register here

This workshop will focus on Gene Expression Omnibus (GEO) repository. We will learn how to find high throughput gene expression studies – bulk RNA-seq/ scRNA-seq /microarray from GEO, retrieve gene expression count data, and generate a list of differentially expressed genes (DEG) between two conditions (disease state vs. normal, drug treatment vs. control, virus infection vs. mock treatment). We will use a variety of bioinformatics tools such as BioJupies, Correlation engine, GEO2R, etc. Additionally, best practices and guidelines on how to submit your own high throughput gene expression data to GEO will also be discussed.

HSLS Fall 2021 MolBio Info Service Training Workshops schedule

Contact the HSLS Molecular Biology Information Service with any questions.

(Photo by Shane McLendon on Unsplash)