• WHAT: Spatial Transcriptomics & CITE-Seq Data Analysis w/ Partek Flow
  • WHEN: December 15th, 10am-12pm & 1-3pm
  • WHERE: In-person or Online; instructions upon registration
  • WHO: Ansuman Chattopadhyay & Sri Chaparala
  • HOW: Register here

In this workshop, we will cover the advanced single-cell RNASeq analysis techniques such as CITE Seq and Spatial Transcriptomics.

Participants will learn how to

  • import 10x Genomics CITE-Seq and Spatial Transcriptomics (Visium) data to Partek Flow
  • merge expression data with histological information
  • filter and normalize the data
  • generate PCA, t-SNE, and UMAP plots to visualize data
  • identify cell populations, biomarkers, and compute differential gene expressions between two cell populations

HSLS Fall 2021 MolBio Info Service Training Workshops schedule

Contact the HSLS Molecular Biology Information Service with any questions.

(Photo by Shot by Cerqueira on Unsplash)