- WHAT: Pathway Enrichment Analysis & Visualization with GSEA & Cytoscape
- WHEN: December 1st, 10am-12pm & 1-3pm
- WHERE: In-person or Online; instructions upon registration
- WHO: Ansuman Chattopadhyay & Sri Chaparala
- HOW: Register here
This is a two-part workshop.
Part-1, morning session, focuses on uncovering the biology hidden behind the extracted differentially expressed gene list by searching publicly available pathway enrichment analysis resources, including Gene Ontology (GO), Molecular Signature Database (MsigDB), Reactome, Panther, KEGG, PathwayCommons, and WikiPathways using GSEA and g: Profiler.
Part-2, the afternoon session, entails the visualization of gene expression using Cytoscape. We cover how to upload gene lists into publicly available protein interaction databases such as StringDB to retrieve relevant interaction networks and import them into Cytoscape and analyze gene ontology terms and pathways. We also cover how to generate enrichment maps using GSEA and g: Profiler results in Cytoscape.
HSLS Fall 2021 MolBio Info Service Training Workshops schedule
Contact the HSLS Molecular Biology Information Service with any questions.