WHAT: Partek workshops on RNA-Seq & Single Cell Analysis
WHEN: Weds March 21st, 9am-12pm and 1pm-3pm
WHERE: Scaife Hall, Falk Library, Classroom 2
HOW: Register here
Join us for a complimentary data analysis workshop lead by our experts. Using Partek® Genomics Suite® analysis software, you will be lead step-by-step through the analysis of an RNA-Seq data set. We will teach you analysis best practices and how to overcome common challenges. There will also be a seminar on how to analyze Single Cell data using Partek® Flow® software. You are welcome to attend only one or both workshops.
RNA-Seq Analysis with Partek Genomics Suite, 9am-12pm
REGISTER HERE
- Overview of Partek Genomics Suite
- Hands-on training on normalized read counts
- Import FPKM count matrix
- Annotate samples
- Filter low expression genes
- Data normalization
- Data visualize distribution: PCA, box plot, histogram etc.
- Differential expression detection
- Result visualization: Volcano plot, dot plot, heatmap etc.
- Significant gene list creation
- Data export
- Q&A
Single Cell Analysis with Partek Flow, 1pm-3pm
REGISTER HERE
- Overview of Partek Flow
- Live demo of Partek Flow on bulk/SC RNA-Seq data analysis
- Data import
- QA/QC
- Alignment
- Quantification and normalization
- Classification
- Differential expression detection
- Visualization: PCA, t-SNE, genome browser etc.
- Q&A