Wednesday, October 23, 2024, 1-4 p.m., Online
Taught by Srilakshmi Chaparala and Ansuman Chattopadhyay
Register for Integrating ChIP-Seq/ATAC-Seq and Gene Expression Data: A Comprehensive Analysis using Partek Flow

Join us for a workshop on integrated analysis of ChipSeq/ATAC Seq with gene expression data using HSLS-licensed Partek Flow software. This workshop is geared towards experimental biologists seeking to learn how to analyze epigenomic or gene expression data generated through experiments or retrieved from a publication or a repository such as GEO. The software covered in the workshop operates through a user-friendly, point-and-click graphical user interface, so neither computer programming experience nor familiarity with the command-line interface is required.

Upon completing this class, you should be able to:
  • import ChIPSeq/ATACSeq reads from an NCBI GEO dataset
  • align the reads to a reference genome
  • identify, annotate and visualize the peaks from aligned ChIP-Seq /ATAC Seq data
  • identify enriched known/novel sequence motifs
  • integrate with gene expression data
  • find enriched gene sets and visualize the results
Level: Novice
What should you do before attending this class: Register for Partek Flow software
Recording status: This class will be recorded and shared with attendees.
Class Materials: Class materials will be shared with attendees.