Wednesday, February 12, 2025, 1-3 p.m.
Online or In Person in the Falk Library Classroom
Taught by Ansuman Chattopadhyay, Srilakshmi Chaparala
Register for Basic ScRNA-Seq Analysis using Partek Flow

This is the 2nd workshop of our four-part workshop series “Mastering Single-Cell Analysis with Partek Flow” that will provide in-depth exploration of single cell technologies and their applications. Leveraging Partek Flow software, this series will cover the entire workflow, from data import, pre-processing to results interpretation and visualization.

Workshop 2: Basic ScRNASeq Analysis with using Partek Flow dive into the world of single-cell RNA seq analysis using Partek Flow. This comprehensive workshop will guide you through the analysis of the PBMC1K dataset, a single sample of peripheral blood mononuclear cells (PBMCs) and identify the cell types and visualize.

Target Audience: Experimental biologists seeking to analyze single cell data generated through experiments or retrieved from public databases. The software covered in the workshop operates through a user-friendly, point-and-click graphical user interface, so programming experience is not required.
Upon completing this class, you should be able to:
  • Import and preprocess single-cell count matrix data
  • Perform quality control and filtering of cells and genes
  • Conduct dimensionality reduction and clustering analysis
  • Identify the cell types and differentially expressed genes and visualize
Level: Novice
Prerequisites: Optional but recommended: Watch the previous workshop recordings (available on our Class Materials page)
Recording status: This class will be recorded and shared with attendees.
Class Materials: Class materials will be shared with attendees.