Wednesday, November 20, 2024, 1-3 p.m., Online
Taught by Srilakshmi Chaparala
Register for Gene Expression Visualization using PartekFlow and Cytoscape

This workshop is on the visualization of gene expression data using HSLS-licensed Partek Flow software as well as open-access Cytoscape software. This session is ideal for experimental biologists seeking to learn how to visualize the data generated through experiments or retrieved from a publication or a repository such as GEO. The software covered in the workshop operates through a user-friendly, point-and-click graphical user interface, so neither computer programming experience nor familiarity with the command-line interface is required.

Upon completing this class, you should be able to:
  • import RNA-Seq count matrix data into Partek Flow and identify differentially expressed genes
  • generate publication-quality graphics such as PCA, volcano plots, heat maps, and Venn diagrams
  • analyze protein interaction networks and also gene enrichment maps in Cytoscape