Pathway Analysis: NIH DAVID & IPA
by Ansuman Chattopadhyay, PhD
Wednesday, 21st October 2015
1-3 pm
Falk Library Classroom 2 (upstairs)
Registration is NOT required.
This hands-on workshop introduces open access and commercial biological pathway informatics tools. First we will learn how to mine a list of differentially expressed genes associated with a disease of interest by searching the NCBI Gene Expression Omnibus (GEO) using the library-licensed tool NextBio. Then we will focus on uncovering the biology hidden behind the extracted gene list by searching protein-protein interactions and literature-curated gene/protein knowledgebases using pathway informatics software, including Ingenuity Pathway Analysis (IPA) and NIH DAVID.
This class is approved for AMA Category 2 CME credit.