{"id":16732,"date":"2024-10-23T11:06:15","date_gmt":"2024-10-23T15:06:15","guid":{"rendered":"https:\/\/info.hsls.pitt.edu\/updatereport\/?p=16732"},"modified":"2024-10-28T12:44:59","modified_gmt":"2024-10-28T16:44:59","slug":"featured-class-gene-expression-visualization-using-partekflow-and-cytoscape","status":"publish","type":"post","link":"https:\/\/info.hsls.pitt.edu\/updatereport\/featured-class-gene-expression-visualization-using-partekflow-and-cytoscape\/","title":{"rendered":"Featured Class: Gene Expression Visualization using Partek Flow and Cytoscape"},"content":{"rendered":"<p>Join us for this class:<br \/>\nWednesday, November 20, 2024, 1-3 p.m., Online<br \/>\nTaught by <a href=\"https:\/\/www.hsls.pitt.edu\/staff\/sri-chaparala\">Srilakshmi Chaparala<\/a><br \/>\nRegister for <a href=\"https:\/\/www.hsls.pitt.edu\/instruction\/gene-expression-visualization-using-partekflow-and-cytoscape\/5533\">Gene Expression Visualization using Partek Flow and Cytoscape<\/a>*<\/p>\n<p>This workshop is on the visualization of gene expression data using HSLS-licensed <a href=\"https:\/\/hsls.libguides.com\/MBISsoftware\/partekflow\">Partek Flow<\/a>, a start-to-finish software analysis solution for data applications, and <a href=\"https:\/\/cytoscape.org\/\">Cytoscape<\/a>, an open-source software platform for visualizing complex networks and integrating them with any type of attribute data. These tools enable researchers of all skill levels to confidently perform data analysis.<!--more--><\/p>\n<p><strong>Upon completing this class, you should be able to:<\/strong><\/p>\n<ul>\n<li>import RNA-Seq count matrix data into Partek Flow and identify differentially expressed genes<\/li>\n<li>generate publication-quality graphics such as PCA, volcano plots, heat maps, and Venn diagrams<\/li>\n<li>analyze protein interaction networks and gene enrichment maps in Cytoscape<\/li>\n<\/ul>\n<p>If you are unable to attend this scheduled class, consider <a href=\"https:\/\/www.hsls.pitt.edu\/group-course-instruction\">requesting a customized instruction session<\/a> for your course, group, or department.<\/p>\n<p>*HSLS classes are open to University of Pittsburgh faculty, staff, and students, as well as UPMC residents and fellows.<\/p>\n","protected":false},"excerpt":{"rendered":"<p>Join us for this class: Wednesday, November 20, 2024, 1-3 p.m., Online Taught by Srilakshmi Chaparala Register for Gene Expression Visualization using Partek Flow and Cytoscape* This workshop is on the visualization of gene expression data using HSLS-licensed Partek Flow, a start-to-finish software analysis solution for data applications, and Cytoscape, an open-source software platform for [&hellip;]<\/p>\n","protected":false},"author":46,"featured_media":0,"comment_status":"closed","ping_status":"closed","sticky":false,"template":"","format":"issue-archives","meta":{"footnotes":"","_links_to":"","_links_to_target":""},"categories":[217],"tags":[-1],"class_list":["post-16732","post","type-post","status-publish","format-standard","hentry","category-november-2024","avhec_catgroup-issue-archives"],"_links":{"self":[{"href":"https:\/\/info.hsls.pitt.edu\/updatereport\/wp-json\/wp\/v2\/posts\/16732","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/info.hsls.pitt.edu\/updatereport\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/info.hsls.pitt.edu\/updatereport\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/info.hsls.pitt.edu\/updatereport\/wp-json\/wp\/v2\/users\/46"}],"replies":[{"embeddable":true,"href":"https:\/\/info.hsls.pitt.edu\/updatereport\/wp-json\/wp\/v2\/comments?post=16732"}],"version-history":[{"count":5,"href":"https:\/\/info.hsls.pitt.edu\/updatereport\/wp-json\/wp\/v2\/posts\/16732\/revisions"}],"predecessor-version":[{"id":16766,"href":"https:\/\/info.hsls.pitt.edu\/updatereport\/wp-json\/wp\/v2\/posts\/16732\/revisions\/16766"}],"wp:attachment":[{"href":"https:\/\/info.hsls.pitt.edu\/updatereport\/wp-json\/wp\/v2\/media?parent=16732"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/info.hsls.pitt.edu\/updatereport\/wp-json\/wp\/v2\/categories?post=16732"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/info.hsls.pitt.edu\/updatereport\/wp-json\/wp\/v2\/tags?post=16732"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}