{"id":15600,"date":"2023-08-15T12:55:47","date_gmt":"2023-08-15T16:55:47","guid":{"rendered":"https:\/\/info.hsls.pitt.edu\/updatereport\/?p=15600"},"modified":"2023-09-06T11:49:46","modified_gmt":"2023-09-06T15:49:46","slug":"molecular-biology-information-service","status":"publish","type":"post","link":"https:\/\/info.hsls.pitt.edu\/updatereport\/molecular-biology-information-service\/","title":{"rendered":"Molecular Biology Information Service"},"content":{"rendered":"<p>The HSLS\u00a0<a href=\"https:\/\/www.hsls.pitt.edu\/molbio\">Molecular Biology Information Service<\/a>\u00a0has a mission: providing bioinformatics resources via software procurement, implementation, and training to assist biomedical scientists with solving their research questions. Also referred to as \u201cHSLS MolBio,\u201d our service has supported Pitt researchers since 2002.<\/p>\n<p>HSLS MolBio follows a four-facet approach:<\/p>\n<ol>\n<li>Identify, procure, and implement\u00a0<a href=\"https:\/\/hsls.libguides.com\/molbio\/licensedtools\/resources\">commercially licensed bioinformatics software<\/a>. Free software access is provided to eligible Pitt affiliates.<\/li>\n<li>Teach hands-on workshops spanning a wide array of topics, notably in contemporary bioinformatics, such as bulk and single-cell RNA-Seq data analysis, pathway enrichment analysis, and gene expression visualization. Use HSLS-licensed software featuring a user-friendly graphical interface, eliminating the need for prior programming experience. Furthermore, introduce participants to the R programming language, emphasizing data wrangling, visualization, and population-based health and genomics data analysis through the <em>All of Us<\/em> Researcher Workbench.<\/li>\n<li>Provide one-on-one\u00a0<a href=\"https:\/\/www.hsls.pitt.edu\/ask-a-molbio-specialist\">consultations<\/a>\u00a0on software\/databases.<\/li>\n<li>Maintain a\u00a0<a href=\"https:\/\/www.hsls.pitt.edu\/molbio\">web portal<\/a> providing overall guidance on accessing and using bioinformatics resources and HSLS MolBio-created web tools.<\/li>\n<\/ol>\n<p><!--more--><\/p>\n<p>The web tools we\u2019ve developed include:<\/p>\n<ul>\n<li><a href=\"https:\/\/www.hsls.pitt.edu\/preprint\">Search.bioPreprint<\/a>: A search engine for preprints, providing cutting-edge, yet-to-be-published, and yet-to-be-peer-reviewed biomedical research articles retrieved from Europe PMC, with results refined via topic clustering.<\/li>\n<li><a href=\"https:\/\/www.hsls.pitt.edu\/molbio\/search?q=%22protein+structure+prediction%22&amp;ifsr=mb-md\">Search.Databases\/Tools<\/a>: A search engine for finding molecular biology databases and software tools with a combined search of the HSLS Online Bioinformatics Resource Collection (OBRC), Nucleic Acids Research Database\/Web Server Issues, and a filtered PubMed search.<\/li>\n<li><a href=\"https:\/\/www.hsls.pitt.edu\/molbio\/search?q=crispr&amp;ifsr=mb-p\">Search.Protocols<\/a>: A search engine for finding experimental methods and protocols with a combined search of Springer Nature Experiments, Protocols.io, and a filtered Europe PMC search.<\/li>\n<li><a href=\"https:\/\/www.hsls.pitt.edu\/molbio\/infobooster\">InfoBoosters<\/a>: A one-click browser widget that integrates digital text with databases to retrieve relevant information on demand.<\/li>\n<\/ul>\n<p>Ansuman Chattopadhyay, Ph.D. in Biochemistry, leads the HSLS MolBio team. Sri Chaparala, Master\u2019s in Applied Biotechnology, provides consultations and training on next-gen sequencing analysis and other bioinformatics resources. Alexis Cenname, Master&#8217;s in Biostatistics, provides expertise through consultations and training, focusing on R scriptwriting and projects using the <em>All of Us<\/em> Researcher Workbench.<\/p>\n<p>To keep current with HSLS MolBio offerings,\u00a0<a href=\"https:\/\/subs.hsls.pitt.edu\/?p=subscribe&amp;id=1\">subscribe to receive HSLS MolBio emails<\/a> from our blog, <a href=\"https:\/\/info.hsls.pitt.edu\/molbio\/\">What\u2019s New @ HSLS MolBio<\/a>. We look forward to working with you!<\/p>\n<p>You can read more about HSLS MolBio services in our publications:<\/p>\n<ul>\n<li>Chattopadhyay A, Iwema CL, Epstein BA, Lee AV, Levine AS.\u00a0<a href=\"https:\/\/pubmed.ncbi.nlm.nih.gov\/30949666\/\">Molecular Biology Information Service: an innovative medical library-based bioinformatics support service for biomedical researchers<\/a>.\u00a0<em>Brief Bioinform<\/em>. 2020; 21(3):876-884. PMID: 30949666.<\/li>\n<li>Gau KH, Dillon P, Donaldson T, Wahl SE, Iwema CL.\u00a0<a href=\"https:\/\/doi.org\/10.5195\/jmla.2020.902\">Partnering with postdocs: a library model for supporting postdoctoral researchers and educating the academic research community<\/a>.\u00a0<em>J Med Libr Assoc<\/em>. 2020; 108(3):480-486. DOI: 5195\/jmla.2020.902.<\/li>\n<li>Iwema CL, LaDue J, Zack A, Chattopadhyay A.\u00a0<a href=\"https:\/\/pubmed.ncbi.nlm.nih.gov\/27508060\/\">bioPreprint: a discovery tool for cutting edge, preprint biomedical research articles<\/a>.\u00a0<em>F1000Res<\/em>. 2016; 5:1396. Published 2016 Jun 16. PMID: 27508060.<\/li>\n<\/ul>\n<p>~Ansuman Chattopadhyay<\/p>\n","protected":false},"excerpt":{"rendered":"<p>The HSLS\u00a0Molecular Biology Information Service\u00a0has a mission: providing bioinformatics resources via software procurement, implementation, and training to assist biomedical scientists with solving their research questions. Also referred to as \u201cHSLS MolBio,\u201d our service has supported Pitt researchers since 2002. HSLS MolBio follows a four-facet approach: Identify, procure, and implement\u00a0commercially licensed bioinformatics software. Free software access [&hellip;]<\/p>\n","protected":false},"author":46,"featured_media":0,"comment_status":"closed","ping_status":"closed","sticky":false,"template":"","format":"issue-archives","meta":{"footnotes":"","_links_to":"","_links_to_target":""},"categories":[198],"tags":[-1],"class_list":["post-15600","post","type-post","status-publish","format-standard","hentry","category-september-2023","avhec_catgroup-issue-archives"],"_links":{"self":[{"href":"https:\/\/info.hsls.pitt.edu\/updatereport\/wp-json\/wp\/v2\/posts\/15600","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/info.hsls.pitt.edu\/updatereport\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/info.hsls.pitt.edu\/updatereport\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/info.hsls.pitt.edu\/updatereport\/wp-json\/wp\/v2\/users\/46"}],"replies":[{"embeddable":true,"href":"https:\/\/info.hsls.pitt.edu\/updatereport\/wp-json\/wp\/v2\/comments?post=15600"}],"version-history":[{"count":9,"href":"https:\/\/info.hsls.pitt.edu\/updatereport\/wp-json\/wp\/v2\/posts\/15600\/revisions"}],"predecessor-version":[{"id":15689,"href":"https:\/\/info.hsls.pitt.edu\/updatereport\/wp-json\/wp\/v2\/posts\/15600\/revisions\/15689"}],"wp:attachment":[{"href":"https:\/\/info.hsls.pitt.edu\/updatereport\/wp-json\/wp\/v2\/media?parent=15600"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/info.hsls.pitt.edu\/updatereport\/wp-json\/wp\/v2\/categories?post=15600"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/info.hsls.pitt.edu\/updatereport\/wp-json\/wp\/v2\/tags?post=15600"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}