{"id":5672,"date":"2025-09-04T12:55:39","date_gmt":"2025-09-04T17:55:39","guid":{"rendered":"https:\/\/info.hsls.pitt.edu\/molbio\/?p=5672"},"modified":"2025-09-18T13:40:27","modified_gmt":"2025-09-18T18:40:27","slug":"learn-hsls-gene-expression-visualization-using-partek-flow-september-17","status":"publish","type":"post","link":"https:\/\/info.hsls.pitt.edu\/molbio\/2025\/09\/04\/learn-hsls-gene-expression-visualization-using-partek-flow-september-17\/","title":{"rendered":"Learn @ HSLS: Gene Expression Visualization using Partek Flow, September 17"},"content":{"rendered":"<p>Wednesday, September 17, 2025, 1-3 p.m., Online<br \/>\nTaught by Srilakshmi Chaparala<br \/>\n<a href=\"https:\/\/www.hsls.pitt.edu\/instruction\/molecular-biology\/gene-expression-visualization-using-partek-flow\/5533\">Register for Gene Expression Visualization using Partek Flow<\/a><\/p>\n<div class=\"field field--name-body field--type-text-with-summary field--label-hidden field__item\">\n<p>This hands-on workshop introduces participants to the\u00a0analysis and visualization of gene expression data, with a focus on\u00a0Bulk RNA-Seq dataset\u00a0starting from a count matrix. The session utilizes the\u00a0HSLS-licensed Partek Flow\u00a0software, a user-friendly, point-and-click platform designed to streamline next-generation sequencing (NGS) data analysis for researchers at all experience levels.<\/p>\n<p>This workshop is ideal for experimental biologists seeking to learn how to visualize the data generated through experiments or retrieved from a publication or a repository such as GEO. The software covered in the workshop operates through a user-friendly, point-and-click graphical user interface, so neither computer programming experience nor familiarity with the command-line interface is required.<\/p>\n<\/div>\n<p><!--more--><\/p>\n<div class=\"field field--name-field-learning-objective field--type-string field--label-above\">\n<div class=\"field__label\"><strong>Upon completing this class, you should be able to:<\/strong><\/div>\n<ul class=\"field field--name-field-learning-objective field--type-string field--label-above field__items\">\n<li class=\"field__item\">import RNA-Seq count matrix data into Partek Flow and check the quality of the data<\/li>\n<li class=\"field__item\">filter and normalize the data<\/li>\n<li class=\"field__item\">identify the differentially expression genes<\/li>\n<li class=\"field__item\">generate publication-quality graphics such as PCA, volcano plots, heat maps, and Venn diagrams<\/li>\n<li class=\"field__item\">analyze functionally enriched terms such as GO term associations and pathways<\/li>\n<\/ul>\n<\/div>\n<div class=\"field field--name-field-class-level field--type-list-string field--label-inline\">\n<div class=\"field__label\"><strong>Level:<\/strong> Novice<\/div>\n<div><\/div>\n<\/div>\n<div class=\"field field--name-field-class-prerequisites field--type-text-long field--label-inline\">\n<div class=\"field__label\"><strong>Prerequisites:<\/strong> Registrants should already be able to describe basic bulk RNA-Seq analysis.<\/div>\n<div><\/div>\n<\/div>\n<div class=\"field field--name-field-recording-status field--type-list-string field--label-inline\">\n<div class=\"field__label\"><strong>Recording status:<\/strong> This class will be recorded for HSLS use only. Recordings will not be shared with registrants or attendees.<\/div>\n<\/div>\n<div class=\"field field--name-field-class-materials field--type-list-string field--label-inline\">\n<div><\/div>\n<div class=\"field__label\"><strong>Class Materials:<\/strong> Class materials will be shared with attendees.<\/div>\n<\/div>\n","protected":false},"excerpt":{"rendered":"<p>Wednesday, September 17, 2025, 1-3 p.m., Online<br \/>\nTaught by Srilakshmi Chaparala<br \/>\n<a href=\"https:\/\/www.hsls.pitt.edu\/instruction\/molecular-biology\/gene-expression-visualization-using-partek-flow\/5533\">Register for Gene Expression Visualization using Partek Flow<\/a><\/p>\n<p>This hands-on workshop introduces participants to the\u00a0analysis and visualization of gene expression data, with a focus on\u00a0Bulk RNA-Seq dataset\u00a0starting from a count matrix.<\/p>\n<p><a class=\"read-more\" alt= \"Learn @ HSLS: Gene Expression Visualization using Partek Flow, September 17\" href=\"https:\/\/info.hsls.pitt.edu\/molbio\/2025\/09\/04\/learn-hsls-gene-expression-visualization-using-partek-flow-september-17\/\">Read more&hellip;<\/a><\/p>\n","protected":false},"author":46,"featured_media":4950,"comment_status":"closed","ping_status":"closed","sticky":false,"template":"","format":"standard","meta":{"footnotes":"","_links_to":"","_links_to_target":""},"categories":[59],"tags":[],"class_list":["post-5672","post","type-post","status-publish","format-standard","has-post-thumbnail","hentry","category-september-2025"],"_links":{"self":[{"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/posts\/5672","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/users\/46"}],"replies":[{"embeddable":true,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/comments?post=5672"}],"version-history":[{"count":1,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/posts\/5672\/revisions"}],"predecessor-version":[{"id":5673,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/posts\/5672\/revisions\/5673"}],"wp:featuredmedia":[{"embeddable":true,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/media\/4950"}],"wp:attachment":[{"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/media?parent=5672"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/categories?post=5672"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/tags?post=5672"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}