{"id":5612,"date":"2025-05-01T10:02:50","date_gmt":"2025-05-01T15:02:50","guid":{"rendered":"https:\/\/info.hsls.pitt.edu\/molbio\/?p=5612"},"modified":"2025-06-16T08:13:10","modified_gmt":"2025-06-16T13:13:10","slug":"learn-hsls-basic-scrna-seq-analysis-using-partek-flow-june-11","status":"publish","type":"post","link":"https:\/\/info.hsls.pitt.edu\/molbio\/2025\/05\/01\/learn-hsls-basic-scrna-seq-analysis-using-partek-flow-june-11\/","title":{"rendered":"Learn @ HSLS: Basic ScRNA-Seq Analysis using Partek Flow, June 11"},"content":{"rendered":"<p>Wednesday, June 11, 2025, 2-4 p.m., Online<br \/>\nTaught by Srilakshmi Chaparala<br \/>\n<a href=\"https:\/\/www.hsls.pitt.edu\/instruction\/molecular-biology\/basic-scrna-seq-analysis-using-partek-flow\/12123\">Register for Basic ScRNA-Seq Analysis using Partek Flow<\/a><\/p>\n<div class=\"field field--name-body field--type-text-with-summary field--label-hidden field__item\">\n<p>This is the 2nd workshop of our four-part workshop series \u201c<strong>Mastering Single-Cell Analysis with Partek Flow<\/strong>\u201d\u202fthat will provide in-depth exploration of single cell technologies and their applications. Leveraging Partek Flow software, this series will cover the entire workflow, from data import, pre-processing\u202fto results interpretation and visualization.<\/p>\n<p><strong>Workshop 2<\/strong>:\u202f<strong>Basic ScRNASeq Analysis with using Partek Flow\u00a0<\/strong>dive into the world of single-cell RNA seq analysis using Partek Flow. This comprehensive workshop will guide you through the analysis of the PBMC1K dataset, a single sample of peripheral blood mononuclear cells (PBMCs) and identify the cell types and visualize.<\/p>\n<p><!--more--><\/p>\n<p><strong>Target Audience:\u00a0<\/strong>Experimental biologists seeking to analyze single cell data generated through experiments or retrieved from public databases. The software covered in the workshop operates through a user-friendly, point-and-click graphical user interface, so programming experience is not required.<\/p>\n<\/div>\n<div class=\"field field--name-field-learning-objective field--type-string field--label-above\">\n<div class=\"field__label\"><strong>Upon completing this class, you should be able to:<\/strong><\/div>\n<ul class=\"field field--name-field-learning-objective field--type-string field--label-above field__items\">\n<li class=\"field__item\">Import and preprocess single-cell count matrix data<\/li>\n<li class=\"field__item\">Perform quality control and filtering of cells and genes<\/li>\n<li class=\"field__item\">Conduct dimensionality reduction and clustering analysis<\/li>\n<li class=\"field__item\">Identify the cell types and differentially expressed genes and visualize<\/li>\n<\/ul>\n<\/div>\n<div class=\"field field--name-field-class-level field--type-list-string field--label-inline\">\n<div class=\"field__label\"><strong>Level:<\/strong> Novice<\/div>\n<div><\/div>\n<\/div>\n<div class=\"field field--name-field-class-prerequisites field--type-text-long field--label-inline\">\n<div class=\"field__label\"><strong>Prerequisites:<\/strong> Optional but recommended: Watch the previous workshop recording (available on our Class Materials page)<\/div>\n<\/div>\n<div class=\"field field--name-field-recording-status field--type-list-string field--label-inline\">\n<div><\/div>\n<div class=\"field__label\"><strong>Recording status:<\/strong> This class will be recorded and shared with attendees.<\/div>\n<\/div>\n<div class=\"field field--name-field-class-materials field--type-list-string field--label-inline\">\n<div><\/div>\n<div class=\"field__label\"><strong>Class Materials:<\/strong> Class materials will be shared with registrants.<\/div>\n<\/div>\n","protected":false},"excerpt":{"rendered":"<p>Wednesday, June 11, 2025, 2-4 p.m., Online<br \/>\nTaught by Srilakshmi Chaparala<br \/>\n<a href=\"https:\/\/www.hsls.pitt.edu\/instruction\/molecular-biology\/basic-scrna-seq-analysis-using-partek-flow\/12123\">Register for Basic ScRNA-Seq Analysis using Partek Flow<\/a><\/p>\n<p>This is the 2nd workshop of our four-part workshop series \u201c<strong>Mastering Single-Cell Analysis with Partek Flow<\/strong>\u201d\u202fthat will provide in-depth exploration of single cell technologies and their applications.<\/p>\n<p><a class=\"read-more\" alt= \"Learn @ HSLS: Basic ScRNA-Seq Analysis using Partek Flow, June 11\" href=\"https:\/\/info.hsls.pitt.edu\/molbio\/2025\/05\/01\/learn-hsls-basic-scrna-seq-analysis-using-partek-flow-june-11\/\">Read more&hellip;<\/a><\/p>\n","protected":false},"author":46,"featured_media":5378,"comment_status":"closed","ping_status":"closed","sticky":false,"template":"","format":"standard","meta":{"footnotes":"","_links_to":"","_links_to_target":""},"categories":[56],"tags":[],"class_list":["post-5612","post","type-post","status-publish","format-standard","has-post-thumbnail","hentry","category-may-2025"],"_links":{"self":[{"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/posts\/5612","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/users\/46"}],"replies":[{"embeddable":true,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/comments?post=5612"}],"version-history":[{"count":2,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/posts\/5612\/revisions"}],"predecessor-version":[{"id":5621,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/posts\/5612\/revisions\/5621"}],"wp:featuredmedia":[{"embeddable":true,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/media\/5378"}],"wp:attachment":[{"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/media?parent=5612"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/categories?post=5612"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/tags?post=5612"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}