{"id":5601,"date":"2025-05-01T10:05:37","date_gmt":"2025-05-01T15:05:37","guid":{"rendered":"https:\/\/info.hsls.pitt.edu\/molbio\/?p=5601"},"modified":"2025-05-29T12:55:02","modified_gmt":"2025-05-29T17:55:02","slug":"learn-hsls-bulk-rna-seq-data-analysis-using-clc-genomics-workbench-may-21","status":"publish","type":"post","link":"https:\/\/info.hsls.pitt.edu\/molbio\/2025\/05\/01\/learn-hsls-bulk-rna-seq-data-analysis-using-clc-genomics-workbench-may-21\/","title":{"rendered":"Learn @ HSLS: Bulk RNA-seq data analysis using CLC Genomics Workbench, May 28"},"content":{"rendered":"<p>Wednesday,\u00a0 May 28, 2025, 1-4pm, Online<br \/>\nTaught by Ansuman Chattopadhyay and Srilakshmi Chaparala<br \/>\n<a href=\"https:\/\/www.hsls.pitt.edu\/instruction\/bulk-rna-seq-data-analysis-using-clc-genomics-workbench\/5909\">Register for Bulk RNA-seq data analysis using CLC Genomics Workbench<\/a><\/p>\n<div class=\"field field--name-body field--type-text-with-summary field--label-hidden field__item\">\n<p>This workshop teaches bulk RNA-Seq data analysis using CLC Genomics Workbench software.\u00a0 This session is ideal for experimental biologists seeking to analyze bulk RNA-Seq data generated through experiments or retrieved from a repository such as GEO.<\/p>\n<p>The software covered in the workshop operates through a user-friendly, point-and-click graphical user interface, so neither programming experience nor familiarity with the command-line interface is required. Upon registration, you will receive links to workshop materials that you can view on your schedule.<\/p>\n<\/div>\n<p><!--more--><\/p>\n<div class=\"field field--name-field-learning-objective field--type-string field--label-above\">\n<div class=\"field__label\"><strong>Upon completing this class, you should be able to:<\/strong><\/div>\n<ul class=\"field field--name-field-learning-objective field--type-string field--label-above field__items\">\n<li class=\"field__item\">access the CLCbio Genomics Server hosted by Pitt CRC<\/li>\n<li class=\"field__item\">import RNA-Seq FASTQ reads from a GEO dataset<\/li>\n<li class=\"field__item\">assess the quality of RNA-Seq data<\/li>\n<li class=\"field__item\">align reads to a reference genome<\/li>\n<li class=\"field__item\">estimate known gene and transcript expression<\/li>\n<li class=\"field__item\">perform differential expression analysis<\/li>\n<li class=\"field__item\">visualize data by generating PCA and heatmaps<\/li>\n<\/ul>\n<\/div>\n","protected":false},"excerpt":{"rendered":"<p>Wednesday,\u00a0 May 28, 2025, 1-4pm, Online<br \/>\nTaught by Ansuman Chattopadhyay and Srilakshmi Chaparala<br \/>\n<a href=\"https:\/\/www.hsls.pitt.edu\/instruction\/bulk-rna-seq-data-analysis-using-clc-genomics-workbench\/5909\">Register for Bulk RNA-seq data analysis using CLC Genomics Workbench<\/a><\/p>\n<p>This workshop teaches bulk RNA-Seq data analysis using CLC Genomics Workbench software.\u00a0<\/p>\n<p><a class=\"read-more\" alt= \"Learn @ HSLS: Bulk RNA-seq data analysis using CLC Genomics Workbench, May 28\" href=\"https:\/\/info.hsls.pitt.edu\/molbio\/2025\/05\/01\/learn-hsls-bulk-rna-seq-data-analysis-using-clc-genomics-workbench-may-21\/\">Read more&hellip;<\/a><\/p>\n","protected":false},"author":46,"featured_media":5342,"comment_status":"closed","ping_status":"closed","sticky":false,"template":"","format":"standard","meta":{"footnotes":"","_links_to":"","_links_to_target":""},"categories":[56],"tags":[],"class_list":["post-5601","post","type-post","status-publish","format-standard","has-post-thumbnail","hentry","category-may-2025"],"_links":{"self":[{"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/posts\/5601","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/users\/46"}],"replies":[{"embeddable":true,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/comments?post=5601"}],"version-history":[{"count":3,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/posts\/5601\/revisions"}],"predecessor-version":[{"id":5616,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/posts\/5601\/revisions\/5616"}],"wp:featuredmedia":[{"embeddable":true,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/media\/5342"}],"wp:attachment":[{"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/media?parent=5601"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/categories?post=5601"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/tags?post=5601"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}