{"id":5572,"date":"2025-04-03T08:18:58","date_gmt":"2025-04-03T13:18:58","guid":{"rendered":"https:\/\/info.hsls.pitt.edu\/molbio\/?p=5572"},"modified":"2025-04-16T14:01:02","modified_gmt":"2025-04-16T19:01:02","slug":"learn-hsls-basic-spatial-transcriptomic-analysis-using-partek-flow-april-16","status":"publish","type":"post","link":"https:\/\/info.hsls.pitt.edu\/molbio\/2025\/04\/03\/learn-hsls-basic-spatial-transcriptomic-analysis-using-partek-flow-april-16\/","title":{"rendered":"Learn @ HSLS: Basic Spatial Transcriptomic Analysis using Partek Flow, April 16"},"content":{"rendered":"<div class=\"field field--name-body field--type-text-with-summary field--label-hidden field__item\">\n<p>Wednesday, April 16, 2025, 1-3 p.m.<br \/>\nOnline or In Person in the Falk Library Classroom<br \/>\nTaught by Srilakshmi Chaparala<br \/>\n<a href=\"https:\/\/www.hsls.pitt.edu\/instruction\/molecular-biology\/basic-spatial-transcriptomic-analysis-using-partek-flow\/12127\">Register for Basic Spatial Transcriptomic Analysis using Partek Flow<\/a><\/p>\n<p>This is the 2nd workshop of our three-part workshop series \u201c<strong>Mastering Spatial Transcriptomic Analysis with Partek flow<\/strong>\u201d\u202fthat will provide in-depth exploration of spatial transcriptomic technologies and their applications. Leveraging Partek Flow software, this series covers the entire workflow, from data import, preprocessing to results interpretation and visualization.<\/p>\n<p><strong>Workshop 2<\/strong>:\u202f<strong>Basic Spatial Transcriptomic Analysis using Partek Flow\u00a0<\/strong>delve into basic spatial transcriptomics analysis using Partek Flow and also data analysis workflows and visualization.<\/p>\n<\/div>\n<p><!--more--><\/p>\n<div class=\"field field--name-field-learning-objective field--type-string field--label-above\">\n<div><strong>Target Audience:<\/strong> Experimental biologists seeking to analyze spatial transcriptomic\u202fdata generated through experiments or retrieved from public databases. The software covered in the workshop operates through a user-friendly, point-and-click graphical user interface, so no programming experience is required.<\/div>\n<div><\/div>\n<div class=\"field__label\"><strong>Upon completing this class, you should be able to:<\/strong><\/div>\n<ul class=\"field field--name-field-learning-objective field--type-string field--label-above field__items\">\n<li class=\"field__item\">Import and preprocess spatial count matrix data<\/li>\n<li class=\"field__item\">Perform quality control and filtering of cells and genes<\/li>\n<li class=\"field__item\">Conduct data normalization and dimensionality reduction and clustering analysis<\/li>\n<li class=\"field__item\">Perform spatial analysis and visualization<\/li>\n<\/ul>\n<\/div>\n<div class=\"field field--name-field-class-level field--type-list-string field--label-inline\">\n<div class=\"field__label\"><strong>Level:<\/strong> Novice<\/div>\n<div><\/div>\n<\/div>\n<div>\n<div class=\"field__label\"><strong>Prerequisites:<\/strong> Optional but recommended: Watch the previous workshop recording (available on our Class Materials page)<\/div>\n<div><\/div>\n<\/div>\n<div class=\"field field--name-field-recording-status field--type-list-string field--label-inline\">\n<div class=\"field__label\"><strong>Recording status:<\/strong> This class will be recorded and shared with attendees.<\/div>\n<div><\/div>\n<\/div>\n<div class=\"field field--name-field-class-materials field--type-list-string field--label-inline\">\n<div class=\"field__label\"><strong>Class Materials:<\/strong> Class materials will be shared with attendees.<\/div>\n<\/div>\n","protected":false},"excerpt":{"rendered":"<p>Wednesday, April 16, 2025, 1-3 p.m.<br \/>\nOnline or In Person in the Falk Library Classroom<br \/>\nTaught by Srilakshmi Chaparala<br \/>\n<a href=\"https:\/\/www.hsls.pitt.edu\/instruction\/molecular-biology\/basic-spatial-transcriptomic-analysis-using-partek-flow\/12127\">Register for Basic Spatial Transcriptomic Analysis using Partek Flow<\/a><\/p>\n<p>This is the 2nd workshop of our three-part workshop series \u201c<strong>Mastering Spatial Transcriptomic Analysis with Partek flow<\/strong>\u201d\u202fthat will provide in-depth exploration of spatial transcriptomic technologies and their applications.<\/p>\n<p><a class=\"read-more\" alt= \"Learn @ HSLS: Basic Spatial Transcriptomic Analysis using Partek Flow, April 16\" href=\"https:\/\/info.hsls.pitt.edu\/molbio\/2025\/04\/03\/learn-hsls-basic-spatial-transcriptomic-analysis-using-partek-flow-april-16\/\">Read more&hellip;<\/a><\/p>\n","protected":false},"author":46,"featured_media":5573,"comment_status":"closed","ping_status":"closed","sticky":false,"template":"","format":"standard","meta":{"footnotes":"","_links_to":"","_links_to_target":""},"categories":[55],"tags":[],"class_list":["post-5572","post","type-post","status-publish","format-standard","has-post-thumbnail","hentry","category-april-2025"],"_links":{"self":[{"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/posts\/5572","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/users\/46"}],"replies":[{"embeddable":true,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/comments?post=5572"}],"version-history":[{"count":1,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/posts\/5572\/revisions"}],"predecessor-version":[{"id":5574,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/posts\/5572\/revisions\/5574"}],"wp:featuredmedia":[{"embeddable":true,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/media\/5573"}],"wp:attachment":[{"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/media?parent=5572"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/categories?post=5572"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/tags?post=5572"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}