{"id":5477,"date":"2024-11-15T11:28:41","date_gmt":"2024-11-15T16:28:41","guid":{"rendered":"https:\/\/info.hsls.pitt.edu\/molbio\/?p=5477"},"modified":"2024-11-26T10:05:57","modified_gmt":"2024-11-26T15:05:57","slug":"learn-hsls-gene-expression-visualization-using-partekflow-and-cytoscape-november-20","status":"publish","type":"post","link":"https:\/\/info.hsls.pitt.edu\/molbio\/2024\/11\/15\/learn-hsls-gene-expression-visualization-using-partekflow-and-cytoscape-november-20\/","title":{"rendered":"Learn @ HSLS: Gene Expression Visualization using PartekFlow and Cytoscape, November 20"},"content":{"rendered":"<p>Wednesday, November 20, 2024, 1-3 p.m., Online<br \/>\nTaught by Srilakshmi Chaparala<br \/>\n<a href=\"https:\/\/www.hsls.pitt.edu\/instruction\/gene-expression-visualization-using-partekflow-and-cytoscape\/5533\">Register for Gene Expression Visualization using PartekFlow and Cytoscape<\/a><\/p>\n<div class=\"field field--name-body field--type-text-with-summary field--label-hidden field__item\">\n<p>This workshop is on the visualization of gene expression data using HSLS-licensed\u00a0<a href=\"https:\/\/hsls.libguides.com\/MBIStools\/partekflow\">Partek Flow\u00a0<\/a>software as well as open-access\u00a0<a href=\"https:\/\/cytoscape.org\/\">Cytoscape<\/a> software. This session is ideal for experimental biologists seeking to learn how to visualize the data generated through experiments or retrieved from a publication or a repository such as GEO. The software covered in the workshop operates through a user-friendly, point-and-click graphical user interface, so neither computer programming experience nor familiarity with the command-line interface is required.<\/p>\n<\/div>\n<p><!--more--><\/p>\n<div class=\"field field--name-field-learning-objective field--type-string field--label-above\">\n<div class=\"field__label\"><strong>Upon completing this class, you should be able to:<\/strong><\/div>\n<ul class=\"field field--name-field-learning-objective field--type-string field--label-above field__items\">\n<li class=\"field__item\">import RNA-Seq count matrix data into Partek Flow and identify differentially expressed genes<\/li>\n<li class=\"field__item\">generate publication-quality graphics such as PCA, volcano plots, heat maps, and Venn diagrams<\/li>\n<li class=\"field__item\">analyze protein interaction networks and also gene enrichment maps in Cytoscape<\/li>\n<\/ul>\n<\/div>\n<div class=\"field field--name-field-class-level field--type-list-string field--label-inline\"><\/div>\n","protected":false},"excerpt":{"rendered":"<p>Wednesday, November 20, 2024, 1-3 p.m., Online<br \/>\nTaught by Srilakshmi Chaparala<br \/>\n<a href=\"https:\/\/www.hsls.pitt.edu\/instruction\/gene-expression-visualization-using-partekflow-and-cytoscape\/5533\">Register for Gene Expression Visualization using PartekFlow and Cytoscape<\/a><\/p>\n<p>This workshop is on the visualization of gene expression data using HSLS-licensed\u00a0<a href=\"https:\/\/hsls.libguides.com\/MBIStools\/partekflow\">Partek Flow\u00a0<\/a>software as well as open-access\u00a0<a href=\"https:\/\/cytoscape.org\/\">Cytoscape<\/a> software.<\/p>\n<p><a class=\"read-more\" alt= \"Learn @ HSLS: Gene Expression Visualization using PartekFlow and Cytoscape, November 20\" href=\"https:\/\/info.hsls.pitt.edu\/molbio\/2024\/11\/15\/learn-hsls-gene-expression-visualization-using-partekflow-and-cytoscape-november-20\/\">Read more&hellip;<\/a><\/p>\n","protected":false},"author":46,"featured_media":4950,"comment_status":"closed","ping_status":"closed","sticky":false,"template":"","format":"standard","meta":{"footnotes":"","_links_to":"","_links_to_target":""},"categories":[50],"tags":[],"class_list":["post-5477","post","type-post","status-publish","format-standard","has-post-thumbnail","hentry","category-november-2024"],"_links":{"self":[{"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/posts\/5477","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/users\/46"}],"replies":[{"embeddable":true,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/comments?post=5477"}],"version-history":[{"count":1,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/posts\/5477\/revisions"}],"predecessor-version":[{"id":5478,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/posts\/5477\/revisions\/5478"}],"wp:featuredmedia":[{"embeddable":true,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/media\/4950"}],"wp:attachment":[{"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/media?parent=5477"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/categories?post=5477"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/tags?post=5477"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}