{"id":5172,"date":"2023-09-20T14:45:16","date_gmt":"2023-09-20T19:45:16","guid":{"rendered":"https:\/\/info.hsls.pitt.edu\/molbio\/?p=5172"},"modified":"2023-10-03T14:27:15","modified_gmt":"2023-10-03T19:27:15","slug":"september-27-ipa-and-correlation-engine-a-comprehensive-approach-to-pathway-enrichment-analysis","status":"publish","type":"post","link":"https:\/\/info.hsls.pitt.edu\/molbio\/2023\/09\/20\/september-27-ipa-and-correlation-engine-a-comprehensive-approach-to-pathway-enrichment-analysis\/","title":{"rendered":"September 27: IPA and Correlation Engine &#8211; A Comprehensive Approach to Pathway Enrichment Analysis"},"content":{"rendered":"<p>Wednesday, September 27, 2023, 1-4 p.m.<br \/>\nHybrid session: Attend online or in person in the Falk Library Classroom<br \/>\n<a href=\"https:\/\/www.hsls.pitt.edu\/instruction\/ipa-and-correlation-engine-comprehensive-approach-pathway-enrichment-analysis\/6513\">Register for IPA and Correlation Engine<\/a><\/p>\n<p>In this engaging workshop, you will learn how to analyze differentially expressed genes (DEG) associated with genome-scale experiments, such as RNA-Seq gene expression studies, and gain mechanistic insights using Ingenuity Pathway Analysis and Correlation Engine software.<!--more--><\/p>\n<p><strong>Learning Objectives:<\/strong><\/p>\n<p>Upon completion, you will be able to:<\/p>\n<ul>\n<li>Retrieve a list of DEGs associated with genome-scale experiments (e.g., &#8220;treatment vs. control,&#8221; &#8220;tumor vs. normal,&#8221; or &#8220;infected vs. mock&#8221;) by searching gene expression data repositories (NCBI GEO)<\/li>\n<li>Gain mechanistic insights by identifying statistically overrepresented terms (biological functions, molecular processes, diseases, etc.) and pathways present in the DEG list<\/li>\n<li>Predict upstream causal regulators (transcription factors, miRNA, etc.)<\/li>\n<li>Retrieve datasets from GEO that exhibit similar or opposite gene expression profiles<\/li>\n<\/ul>\n","protected":false},"excerpt":{"rendered":"<p>Wednesday, September 27, 2023, 1-4 p.m.<br \/>\nHybrid session: Attend online or in person in the Falk Library Classroom<br \/>\n<a href=\"https:\/\/www.hsls.pitt.edu\/instruction\/ipa-and-correlation-engine-comprehensive-approach-pathway-enrichment-analysis\/6513\">Register for IPA and Correlation Engine<\/a><\/p>\n<p>In this engaging workshop, you will learn how to analyze differentially expressed genes (DEG) associated with genome-scale experiments, such as RNA-Seq gene expression studies, and gain mechanistic insights using Ingenuity Pathway Analysis and Correlation Engine software.<\/p>\n<p><a class=\"read-more\" alt= \"September 27: IPA and Correlation Engine &#8211; A Comprehensive Approach to Pathway Enrichment Analysis\" href=\"https:\/\/info.hsls.pitt.edu\/molbio\/2023\/09\/20\/september-27-ipa-and-correlation-engine-a-comprehensive-approach-to-pathway-enrichment-analysis\/\">Read more&hellip;<\/a><\/p>\n","protected":false},"author":46,"featured_media":5165,"comment_status":"closed","ping_status":"closed","sticky":false,"template":"","format":"standard","meta":{"footnotes":"","_links_to":"","_links_to_target":""},"categories":[35],"tags":[],"class_list":["post-5172","post","type-post","status-publish","format-standard","has-post-thumbnail","hentry","category-september-2023"],"_links":{"self":[{"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/posts\/5172","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/users\/46"}],"replies":[{"embeddable":true,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/comments?post=5172"}],"version-history":[{"count":2,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/posts\/5172\/revisions"}],"predecessor-version":[{"id":5184,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/posts\/5172\/revisions\/5184"}],"wp:featuredmedia":[{"embeddable":true,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/media\/5165"}],"wp:attachment":[{"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/media?parent=5172"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/categories?post=5172"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/tags?post=5172"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}