{"id":5164,"date":"2023-09-07T14:50:19","date_gmt":"2023-09-07T19:50:19","guid":{"rendered":"https:\/\/info.hsls.pitt.edu\/molbio\/?p=5164"},"modified":"2023-09-20T14:40:34","modified_gmt":"2023-09-20T19:40:34","slug":"september-12-bulk-rna-seq-data-analysis-using-clc-genomics-workbench","status":"publish","type":"post","link":"https:\/\/info.hsls.pitt.edu\/molbio\/2023\/09\/07\/september-12-bulk-rna-seq-data-analysis-using-clc-genomics-workbench\/","title":{"rendered":"September 12: Bulk RNA-seq data analysis using CLC Genomics Workbench"},"content":{"rendered":"<p>Tuesday, September 12, 2023, 1-4 p.m.<br \/>\nHybrid session: Attend online or in person in the Falk Library Classroom<br \/>\n<a href=\"https:\/\/www.hsls.pitt.edu\/instruction\/bulk-rna-seq-data-analysis-using-clc-genomics-workbench\/5909\">Register for Bulk RNA-seq data analysis using CLC Genomics Workbench<\/a><\/p>\n<p>This workshop teaches\u00a0bulk RNA-Seq data analysis using CLC Genomics Workbench software. Upon registration, you will receive links to workshop materials that you can view on your schedule.<\/p>\n<p><!--more--><\/p>\n<p>Upon completing this class, you should be able to:<\/p>\n<ul>\n<li>access the\u00a0<a href=\"https:\/\/crc.pitt.edu\/getting-started\">CLCbio Genomics Server<\/a>\u00a0hosted\u00a0by\u00a0<a href=\"https:\/\/crc.pitt.edu\/\">Pitt CRC<\/a><\/li>\n<li>import RNA-Seq FASTQ reads from a GEO dataset<\/li>\n<li>assess the quality of RNA-Seq data<\/li>\n<li>align reads to a reference genome<\/li>\n<li>estimate known gene and transcript expression<\/li>\n<li>perform differential expression analysis<\/li>\n<li>visualize data by generating PCA and heatmaps<\/li>\n<\/ul>\n<p><strong>Target Audience<\/strong><\/p>\n<p>Experimental biologists seeking to analyze bulk RNA-Seq data generated through experiments or retrieved from a repository such as GEO. The software covered in the workshop operates through a user-friendly, point-and-click graphical user interface, so neither programming experience nor familiarity with the command-line interface is required.<\/p>\n","protected":false},"excerpt":{"rendered":"<p>Tuesday, September 12, 2023, 1-4 p.m.<br \/>\nHybrid session: Attend online or in person in the Falk Library Classroom<br \/>\n<a href=\"https:\/\/www.hsls.pitt.edu\/instruction\/bulk-rna-seq-data-analysis-using-clc-genomics-workbench\/5909\">Register for Bulk RNA-seq data analysis using CLC Genomics Workbench<\/a><\/p>\n<p>This workshop teaches\u00a0bulk RNA-Seq data analysis using CLC Genomics Workbench software.<\/p>\n<p><a class=\"read-more\" alt= \"September 12: Bulk RNA-seq data analysis using CLC Genomics Workbench\" href=\"https:\/\/info.hsls.pitt.edu\/molbio\/2023\/09\/07\/september-12-bulk-rna-seq-data-analysis-using-clc-genomics-workbench\/\">Read more&hellip;<\/a><\/p>\n","protected":false},"author":46,"featured_media":5165,"comment_status":"closed","ping_status":"closed","sticky":false,"template":"","format":"standard","meta":{"footnotes":"","_links_to":"","_links_to_target":""},"categories":[35],"tags":[],"class_list":["post-5164","post","type-post","status-publish","format-standard","has-post-thumbnail","hentry","category-september-2023"],"_links":{"self":[{"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/posts\/5164","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/users\/46"}],"replies":[{"embeddable":true,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/comments?post=5164"}],"version-history":[{"count":3,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/posts\/5164\/revisions"}],"predecessor-version":[{"id":5168,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/posts\/5164\/revisions\/5168"}],"wp:featuredmedia":[{"embeddable":true,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/media\/5165"}],"wp:attachment":[{"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/media?parent=5164"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/categories?post=5164"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/tags?post=5164"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}