{"id":5037,"date":"2023-03-22T12:11:20","date_gmt":"2023-03-22T17:11:20","guid":{"rendered":"https:\/\/info.hsls.pitt.edu\/molbio\/?p=5037"},"modified":"2023-03-30T12:56:10","modified_gmt":"2023-03-30T17:56:10","slug":"march-29-gene-expression-visualization-using-partekflow-and-cytoscape","status":"publish","type":"post","link":"https:\/\/info.hsls.pitt.edu\/molbio\/2023\/03\/22\/march-29-gene-expression-visualization-using-partekflow-and-cytoscape\/","title":{"rendered":"March 29: Gene Expression Visualization using PartekFlow and Cytoscape"},"content":{"rendered":"<p>Wednesday, March 29, 1-3 p.m., online<\/p>\n<p><a href=\"https:\/\/www.hsls.pitt.edu\/instruction\/gene-expression-visualization-using-partekflow-and-cytoscape\/5533\"><strong>Register for Gene Expression Visualization using PartekFlow and Cytoscape<\/strong><\/a><\/p>\n<div class=\"field field--name-body field--type-text-with-summary field--label-hidden field__item\">\n<p>This workshop is on the visualization of gene expression data using HSLS-licensed <a href=\"https:\/\/hsls.libguides.com\/MBIStools\/partekflow\">Partek Flow<\/a> software as well as open-access <a href=\"https:\/\/cytoscape.org\/\">Cytoscape<\/a> software.<!--more--><\/p>\n<p>Participants will learn :<\/p>\n<ul>\n<li>how to import RNA-Seq count matrix data into Partek Flow and identify differentially expressed genes<\/li>\n<li>generate publication-quality graphics such as PCA, volcano plots, heat maps, and Venn diagrams<\/li>\n<li>how to analyze protein interaction networks and also gene enrichment maps in Cytoscape<\/li>\n<\/ul>\n<p><strong>Target Audience:<\/strong><\/p>\n<p>Experimental biologists seeking to learn how to visualize the data generated through experiments or retrieved from a publication or a repository such as GEO. The software covered in the workshop operates through a user-friendly, point-and-click graphical user interface, so neither computer programming experience nor familiarity with the command-line interface is required.<\/p>\n<\/div>\n<p>&nbsp;<\/p>\n","protected":false},"excerpt":{"rendered":"<p>Wednesday, March 29, 1-3 p.m., online<\/p>\n<p><a href=\"https:\/\/www.hsls.pitt.edu\/instruction\/gene-expression-visualization-using-partekflow-and-cytoscape\/5533\"><strong>Register for Gene Expression Visualization using PartekFlow and Cytoscape<\/strong><\/a><\/p>\n<p>This workshop is on the visualization of gene expression data using HSLS-licensed <a href=\"https:\/\/hsls.libguides.com\/MBIStools\/partekflow\">Partek Flow<\/a> software as well as open-access <a href=\"https:\/\/cytoscape.org\/\">Cytoscape<\/a> software.<\/p>\n<p><a class=\"read-more\" alt= \"March 29: Gene Expression Visualization using PartekFlow and Cytoscape\" href=\"https:\/\/info.hsls.pitt.edu\/molbio\/2023\/03\/22\/march-29-gene-expression-visualization-using-partekflow-and-cytoscape\/\">Read more&hellip;<\/a><\/p>\n","protected":false},"author":4,"featured_media":4950,"comment_status":"closed","ping_status":"closed","sticky":false,"template":"","format":"standard","meta":{"footnotes":"","_links_to":"","_links_to_target":""},"categories":[26],"tags":[],"class_list":["post-5037","post","type-post","status-publish","format-standard","has-post-thumbnail","hentry","category-march-2023"],"_links":{"self":[{"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/posts\/5037","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/users\/4"}],"replies":[{"embeddable":true,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/comments?post=5037"}],"version-history":[{"count":1,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/posts\/5037\/revisions"}],"predecessor-version":[{"id":5038,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/posts\/5037\/revisions\/5038"}],"wp:featuredmedia":[{"embeddable":true,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/media\/4950"}],"wp:attachment":[{"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/media?parent=5037"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/categories?post=5037"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/tags?post=5037"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}