This information is over 2 years old. Information was current at time of publication.{"id":4944,"date":"2022-11-14T09:53:01","date_gmt":"2022-11-14T14:53:01","guid":{"rendered":"https:\/\/info.hsls.pitt.edu\/molbio\/?p=4944"},"modified":"2022-11-21T15:44:06","modified_gmt":"2022-11-21T20:44:06","slug":"nov-16-cite-seq-and-spatial-transcriptomics-data-analysis-with-partek-flow","status":"publish","type":"post","link":"https:\/\/info.hsls.pitt.edu\/molbio\/2022\/11\/14\/nov-16-cite-seq-and-spatial-transcriptomics-data-analysis-with-partek-flow\/","title":{"rendered":"Nov 16 &#8211; CITE-Seq and Spatial Transcriptomics Data Analysis with Partek Flow"},"content":{"rendered":"<p>Wednesday, November 16, 1-4 p.m., online<\/p>\n<p><a href=\"https:\/\/www.hsls.pitt.edu\/instruction\/cite-seq-and-spatial-transcriptomics-data-analysis-partek-flow\/6509\"><strong>Register for CITE-Seq and Spatial Transcriptomics Data Analysis with Partek Flow<\/strong><\/a><\/p>\n<p>In this workshop, we will cover multiomics data analysis &#8211;\u00a0<strong>\u00a0CITE Seq and Spatial Transcriptomics<\/strong>.\u00a0<!--more--><\/p>\n<p>Participants will learn how to<\/p>\n<ul>\n<li>import 10x Genomics CITE-Seq and Spatial Transcriptomics (Visium) data to PartekFlow<\/li>\n<li>merge expression data with histological information<\/li>\n<li>filter and normalize the data<\/li>\n<li>generate PCA, t-SNE, and UMAP plots to visualize data<\/li>\n<li>identify cell populations, biomarkers, and compute differential gene expressions between two cell population<\/li>\n<\/ul>\n<p>Participants are encouraged to work on solving the exercise problems during the\u00a0<strong>hands-on session<\/strong>\u00a0of the workshop.<\/p>\n","protected":false},"excerpt":{"rendered":"<p>Wednesday, November 16, 1-4 p.m., online<\/p>\n<p><a href=\"https:\/\/www.hsls.pitt.edu\/instruction\/cite-seq-and-spatial-transcriptomics-data-analysis-partek-flow\/6509\"><strong>Register for CITE-Seq and Spatial Transcriptomics Data Analysis with Partek Flow<\/strong><\/a><\/p>\n<p>In this workshop, we will cover multiomics data analysis &#8211;\u00a0<strong>\u00a0CITE Seq and Spatial Transcriptomics<\/strong>.\u00a0<\/p>\n<p><a class=\"read-more\" alt= \"Nov 16 &#8211; CITE-Seq and Spatial Transcriptomics Data Analysis with Partek Flow\" href=\"https:\/\/info.hsls.pitt.edu\/molbio\/2022\/11\/14\/nov-16-cite-seq-and-spatial-transcriptomics-data-analysis-with-partek-flow\/\">Read more&hellip;<\/a><\/p>\n","protected":false},"author":4,"featured_media":4945,"comment_status":"closed","ping_status":"closed","sticky":false,"template":"","format":"standard","meta":{"footnotes":"","_links_to":"","_links_to_target":""},"categories":[23],"tags":[],"class_list":["post-4944","post","type-post","status-publish","format-standard","has-post-thumbnail","hentry","category-november-2022"],"_links":{"self":[{"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/posts\/4944","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/users\/4"}],"replies":[{"embeddable":true,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/comments?post=4944"}],"version-history":[{"count":2,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/posts\/4944\/revisions"}],"predecessor-version":[{"id":4947,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/posts\/4944\/revisions\/4947"}],"wp:featuredmedia":[{"embeddable":true,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/media\/4945"}],"wp:attachment":[{"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/media?parent=4944"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/categories?post=4944"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/tags?post=4944"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}