This information is over 2 years old. Information was current at time of publication.{"id":4752,"date":"2022-05-15T07:00:55","date_gmt":"2022-05-15T12:00:55","guid":{"rendered":"https:\/\/info.hsls.pitt.edu\/molbio\/?p=4752"},"modified":"2022-06-30T10:19:50","modified_gmt":"2022-06-30T15:19:50","slug":"june-22-rna-seq-data-analysis-using-clc-genomics-workbench","status":"publish","type":"post","link":"https:\/\/info.hsls.pitt.edu\/molbio\/2022\/05\/15\/june-22-rna-seq-data-analysis-using-clc-genomics-workbench\/","title":{"rendered":"June 22: RNA-Seq Data Analysis using CLC Genomics Workbench"},"content":{"rendered":"<p><a href=\"https:\/\/www.hsls.pitt.edu\/instruction\/rna-seq-data-analysis-using-clc-genomics-workbench-online\/7852\">Register for RNA-Seq Data Analysis using CLC Genomics Workbench<\/a><\/p>\n<p>June 22, <span class=\"TextRun SCXW232313852 BCX0\" lang=\"EN-US\" xml:lang=\"EN-US\" data-contrast=\"auto\"><span class=\"NormalTextRun SCXW232313852 BCX0\">11 a.m.-1 p.m., virtual<\/span><\/span><\/p>\n<p>This is a flipped class; links to PowerPoint slides, lecture videos, and practice exercises that you can view on your own schedule are available upon registration. During this virtual hands-on session, you will learn how to solve the exercise problems.<\/p>\n<p>The workshop lecture video will walk you through the steps of a bulk RNA-seq data analysis process using the HSLS-licensed CLC Genomics Workbench.<\/p>\n<p><!--more--><\/p>\n<p>Participants will learn how to<\/p>\n<ul>\n<li>access the\u00a0<a href=\"https:\/\/crc.pitt.edu\/resources\/htc-cluster\/clcbio-genomics-server\">CLCbio Genomics Server<\/a>\u00a0hosted on the\u00a0<a href=\"https:\/\/crc.pitt.edu\/resources\/htc-user-guide\">HTC Cluster<\/a>\u00a0by\u00a0<a href=\"https:\/\/crc.pitt.edu\/\">Pitt CRC<\/a><\/li>\n<li>import RNA-Seq FASTQ reads from a GEO dataset<\/li>\n<li>assess the quality of RNA-Seq data<\/li>\n<li>align reads to a reference genome<\/li>\n<li>estimate known gene and transcript expression<\/li>\n<li>perform differential expression analysis<\/li>\n<li>visualize data by generating PCA and heatmaps<\/li>\n<\/ul>\n<p>Target Audience:<\/p>\n<p>Experimental biologists seeking to analyze bulk RNA-Seq data generated through experiments or retrieved from a repository such as GEO. The software covered in the workshop operates through a user-friendly, point-and-click graphical user interface, so neither programming experience nor familiarity with the command-line interface is required.<\/p>\n","protected":false},"excerpt":{"rendered":"<p><a href=\"https:\/\/www.hsls.pitt.edu\/instruction\/rna-seq-data-analysis-using-clc-genomics-workbench-online\/7852\">Register for RNA-Seq Data Analysis using CLC Genomics Workbench<\/a><\/p>\n<p>June 22, <span class=\"TextRun SCXW232313852 BCX0\" lang=\"EN-US\" xml:lang=\"EN-US\" data-contrast=\"auto\"><span class=\"NormalTextRun SCXW232313852 BCX0\">11 a.m.-1 p.m., virtual<\/span><\/span><\/p>\n<p>This is a flipped class; links to PowerPoint slides, lecture videos, and practice exercises that you can view on your own schedule are available upon registration.<\/p>\n<p><a class=\"read-more\" alt= \"June 22: RNA-Seq Data Analysis using CLC Genomics Workbench\" href=\"https:\/\/info.hsls.pitt.edu\/molbio\/2022\/05\/15\/june-22-rna-seq-data-analysis-using-clc-genomics-workbench\/\">Read more&hellip;<\/a><\/p>\n","protected":false},"author":38,"featured_media":4745,"comment_status":"closed","ping_status":"closed","sticky":false,"template":"","format":"standard","meta":{"footnotes":"","_links_to":"","_links_to_target":""},"categories":[19],"tags":[],"class_list":["post-4752","post","type-post","status-publish","format-standard","has-post-thumbnail","hentry","category-june-2022"],"_links":{"self":[{"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/posts\/4752","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/users\/38"}],"replies":[{"embeddable":true,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/comments?post=4752"}],"version-history":[{"count":5,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/posts\/4752\/revisions"}],"predecessor-version":[{"id":4762,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/posts\/4752\/revisions\/4762"}],"wp:featuredmedia":[{"embeddable":true,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/media\/4745"}],"wp:attachment":[{"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/media?parent=4752"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/categories?post=4752"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/tags?post=4752"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}