This information is over 2 years old. Information was current at time of publication.{"id":4494,"date":"2021-12-10T11:58:51","date_gmt":"2021-12-10T16:58:51","guid":{"rendered":"https:\/\/info.hsls.pitt.edu\/molbio\/?p=4494"},"modified":"2021-12-15T16:03:25","modified_gmt":"2021-12-15T21:03:25","slug":"12-15-wksp-spatial-transcriptomics-cite-seq","status":"publish","type":"post","link":"https:\/\/info.hsls.pitt.edu\/molbio\/2021\/12\/10\/12-15-wksp-spatial-transcriptomics-cite-seq\/","title":{"rendered":"12\/15 wksp: Spatial Transcriptomics &amp; CITE-Seq"},"content":{"rendered":"<ul>\n<li><strong><span style=\"color: #0c669f\">WHAT:<\/span> <\/strong>Spatial Transcriptomics &amp; CITE-Seq Data Analysis w\/ Partek Flow<\/li>\n<li><strong><span style=\"color: #0c669f\">WHEN:<\/span> <\/strong>December 15th, 10am-12pm &amp; 1-3pm<\/li>\n<li><strong><span style=\"color: #0c669f\">WHERE:<\/span> <\/strong>In-person or Online; instructions upon registration<\/li>\n<li><strong><span style=\"color: #0c669f\">WHO:<\/span> <\/strong>Ansuman Chattopadhyay &amp; Sri Chaparala<\/li>\n<li><strong><span style=\"color: #0c669f\">HOW:<\/span> <\/strong>Register <a href=\"https:\/\/www.hsls.pitt.edu\/instruction\/spatial-transcriptomics-and-cite-seq-data-analysis-partekflow-online\/6509\">here<\/a><\/li>\n<\/ul>\n<p><!--more--><\/p>\n<p>In this workshop, we will cover the advanced single-cell RNASeq analysis techniques such as CITE Seq and Spatial Transcriptomics.<\/p>\n<p>Participants will learn how to<\/p>\n<ul>\n<li>import 10x Genomics CITE-Seq and Spatial Transcriptomics (Visium) data to Partek Flow<\/li>\n<li>merge expression data with histological information<\/li>\n<li>filter and normalize the data<\/li>\n<li>generate PCA, t-SNE, and UMAP plots to visualize data<\/li>\n<li>identify cell populations, biomarkers, and compute differential gene expressions between two cell populations<\/li>\n<\/ul>\n<p><a href=\"http:\/\/files.hsls.pitt.edu\/files\/molbio\/MolbioWorkshops.pdf\">HSLS Fall 2021 MolBio Info Service Training Workshops schedule<\/a><\/p>\n<p><a href=\"https:\/\/www.hsls.pitt.edu\/ask-a-molbio-specialist\">Contact<\/a> the <a href=\"http:\/\/www.hsls.pitt.edu\/molbio\">HSLS Molecular Biology Information Service<\/a> with any questions.<\/p>\n<p>(Photo by <a href=\"https:\/\/unsplash.com\/@shotbycerqueira?utm_source=unsplash&amp;utm_medium=referral&amp;utm_content=creditCopyText\">Shot by Cerqueira<\/a> on <a href=\"https:\/\/unsplash.com\/s\/photos\/space?utm_source=unsplash&amp;utm_medium=referral&amp;utm_content=creditCopyText\">Unsplash<\/a>)<\/p>\n","protected":false},"excerpt":{"rendered":"<ul>\n<li><strong><span style=\"color: #0c669f\">WHAT:<\/span> <\/strong>Spatial Transcriptomics &amp; CITE-Seq Data Analysis w\/ Partek Flow<\/li>\n<li><strong><span style=\"color: #0c669f\">WHEN:<\/span> <\/strong>December 15th, 10am-12pm &amp; 1-3pm<\/li>\n<li><strong><span style=\"color: #0c669f\">WHERE:<\/span> <\/strong>In-person or Online; instructions upon registration<\/li>\n<li><strong><span style=\"color: #0c669f\">WHO:<\/span> <\/strong>Ansuman Chattopadhyay &amp; Sri Chaparala<\/li>\n<li><strong><span style=\"color: #0c669f\">HOW:<\/span> <\/strong>Register <a href=\"https:\/\/www.hsls.pitt.edu\/instruction\/spatial-transcriptomics-and-cite-seq-data-analysis-partekflow-online\/6509\">here<\/a><\/li>\n<\/ul>\n<p><a class=\"read-more\" alt= \"12\/15 wksp: Spatial Transcriptomics &amp; CITE-Seq\" href=\"https:\/\/info.hsls.pitt.edu\/molbio\/2021\/12\/10\/12-15-wksp-spatial-transcriptomics-cite-seq\/\">Read more&hellip;<\/a><\/p>\n","protected":false},"author":31,"featured_media":4495,"comment_status":"closed","ping_status":"closed","sticky":false,"template":"","format":"standard","meta":{"footnotes":"","_links_to":"","_links_to_target":""},"categories":[1],"tags":[],"class_list":["post-4494","post","type-post","status-publish","format-standard","has-post-thumbnail","hentry","category-uncategorized"],"_links":{"self":[{"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/posts\/4494","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/users\/31"}],"replies":[{"embeddable":true,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/comments?post=4494"}],"version-history":[{"count":1,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/posts\/4494\/revisions"}],"predecessor-version":[{"id":4496,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/posts\/4494\/revisions\/4496"}],"wp:featuredmedia":[{"embeddable":true,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/media\/4495"}],"wp:attachment":[{"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/media?parent=4494"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/categories?post=4494"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/tags?post=4494"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}