This information is over 2 years old. Information was current at time of publication.{"id":4141,"date":"2021-04-12T10:47:28","date_gmt":"2021-04-12T15:47:28","guid":{"rendered":"http:\/\/info.hsls.pitt.edu\/molbio\/?p=4141"},"modified":"2021-04-26T10:21:50","modified_gmt":"2021-04-26T15:21:50","slug":"4-21-wksp-pathways-w-open-access-tools","status":"publish","type":"post","link":"https:\/\/info.hsls.pitt.edu\/molbio\/2021\/04\/12\/4-21-wksp-pathways-w-open-access-tools\/","title":{"rendered":"4\/21 wksp: Pathways w\/ Open Access Tools"},"content":{"rendered":"<ul>\n<li><strong><span style=\"color: #19657f\">WHAT:<\/span> <\/strong>Pathway Enrichment Analysis &amp; Visualization w\/ Open Access Tools<\/li>\n<li><strong><span style=\"color: #19657f\">WHEN:<\/span> <\/strong>April 21st, 10am-12pm &amp; 1-3pm<\/li>\n<li><strong><span style=\"color: #19657f\">WHERE:<\/span> <\/strong>Online; instructions upon registration<\/li>\n<li><strong><span style=\"color: #19657f\">WHO:<\/span> <\/strong>Ansuman Chattopadhyay &amp; Sri Chaparala<\/li>\n<li><strong><span style=\"color: #19657f\">HOW:<\/span> <\/strong>Register <a href=\"https:\/\/www.hsls.pitt.edu\/instruction\/pathway-enrichment-analysis-visualization-w-open-access-tools\/5541\">here<\/a><\/li>\n<\/ul>\n<p><!--more--><br \/>\nThis class focuses on uncovering the biology hidden behind a list of genes that are differentially expressed between two conditions (tumor vs. normal, virus-infected vs. mock, etc.) by searching publicly available pathway enrichment analysis resources including Gene Ontology (GO), Molecular Signature Database (MsigDB), Reactome, Panther, KEGG, PathwayCommons, and WikiPathways using GSEA and g: Profiler. We also cover how to generate enrichment maps for GSEA and g:Profiler results in Cytoscape.<\/p>\n<p><strong><span style=\"color: #19657f\">Target Audience:<\/span><\/strong><\/p>\n<p>Experimental biologists seeking to analyze gene lists generated through omics experiments. The software covered in the workshop operates through a user-friendly, point-and-click graphical user Interface, so neither programming experience nor familiarity with command line interface is required.<\/p>\n<p><strong><span style=\"color: #19657f\">Workshop Guide:<\/span><\/strong><\/p>\n<p><a href=\"https:\/\/hsls.libguides.com\/MBISworkshops\/PathwaysOpen\">https:\/\/hsls.libguides.com\/MBISworkshops\/PathwaysOpen<\/a><\/p>\n<p><strong><span style=\"color: #19657f\">Attribution:<\/span><\/strong><\/p>\n<p>Please include the following statement in the acknowledgments section for all publications, posters, and presentations: <strong>Data analysis was performed using {name of software} software licensed through the Molecular Biology Information Service of the Health Sciences Library System, University of Pittsburgh.<\/strong><\/p>\n<p><a href=\"http:\/\/files.hsls.pitt.edu\/files\/molbio\/MolbioWorkshops.pdf\">HSLS Winter\/Spring 2021 MolBio Info Service Training Workshops schedule<\/a><\/p>\n<p><a href=\"https:\/\/www.hsls.pitt.edu\/ask-a-molbio-specialist\">Contact<\/a> the <a href=\"http:\/\/www.hsls.pitt.edu\/molbio\">HSLS Molecular Biology Information Service<\/a> with any questions.<\/p>\n","protected":false},"excerpt":{"rendered":"<ul>\n<li><strong><span style=\"color: #19657f\">WHAT:<\/span> <\/strong>Pathway Enrichment Analysis &amp; Visualization w\/ Open Access Tools<\/li>\n<li><strong><span style=\"color: #19657f\">WHEN:<\/span> <\/strong>April 21st, 10am-12pm &amp; 1-3pm<\/li>\n<li><strong><span style=\"color: #19657f\">WHERE:<\/span> <\/strong>Online; instructions upon registration<\/li>\n<li><strong><span style=\"color: #19657f\">WHO:<\/span> <\/strong>Ansuman Chattopadhyay &amp; Sri Chaparala<\/li>\n<li><strong><span style=\"color: #19657f\">HOW:<\/span> <\/strong>Register <a href=\"https:\/\/www.hsls.pitt.edu\/instruction\/pathway-enrichment-analysis-visualization-w-open-access-tools\/5541\">here<\/a><\/li>\n<\/ul>\n<p><a class=\"read-more\" alt= \"4\/21 wksp: Pathways w\/ Open Access Tools\" href=\"https:\/\/info.hsls.pitt.edu\/molbio\/2021\/04\/12\/4-21-wksp-pathways-w-open-access-tools\/\">Read more&hellip;<\/a><\/p>\n","protected":false},"author":31,"featured_media":3635,"comment_status":"closed","ping_status":"closed","sticky":false,"template":"","format":"standard","meta":{"footnotes":"","_links_to":"","_links_to_target":""},"categories":[1],"tags":[],"class_list":["post-4141","post","type-post","status-publish","format-standard","has-post-thumbnail","hentry","category-uncategorized"],"_links":{"self":[{"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/posts\/4141","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/users\/31"}],"replies":[{"embeddable":true,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/comments?post=4141"}],"version-history":[{"count":8,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/posts\/4141\/revisions"}],"predecessor-version":[{"id":4156,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/posts\/4141\/revisions\/4156"}],"wp:featuredmedia":[{"embeddable":true,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/media\/3635"}],"wp:attachment":[{"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/media?parent=4141"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/categories?post=4141"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/tags?post=4141"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}