This information is over 2 years old. Information was current at time of publication.{"id":4122,"date":"2021-03-23T08:17:52","date_gmt":"2021-03-23T13:17:52","guid":{"rendered":"http:\/\/info.hsls.pitt.edu\/molbio\/?p=4122"},"modified":"2021-04-12T10:28:27","modified_gmt":"2021-04-12T15:28:27","slug":"3-31-wksp-geo-data-mining","status":"publish","type":"post","link":"https:\/\/info.hsls.pitt.edu\/molbio\/2021\/03\/23\/3-31-wksp-geo-data-mining\/","title":{"rendered":"3\/31 wksp: GEO Data Mining"},"content":{"rendered":"<ul>\n<li><strong><span style=\"color: #a46832\">WHAT:<\/span> <\/strong>GEO Data Mining<\/li>\n<li><strong><span style=\"color: #a46832\">WHEN:<\/span> <\/strong>March 31st, 10am-12pm<\/li>\n<li><strong><span style=\"color: #a46832\">WHERE:<\/span> <\/strong>Online; instructions upon registration<\/li>\n<li><strong><span style=\"color: #a46832\">WHO:<\/span> <\/strong>Ansuman Chattopadhyay<\/li>\n<li><strong><span style=\"color: #a46832\">HOW:<\/span> <\/strong>Register <a href=\"https:\/\/www.hsls.pitt.edu\/instruction\/geo-data-mining\/5537\">here<\/a><\/li>\n<\/ul>\n<p><!--more--><br \/>\nThis workshop teaches how to retrieve a list of differentially expressed genes (DEG) associated with a gene expression study (RNA-seq \/ microarray) by searching the <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/geo\/\">Gene Expression Omnibus<\/a> (GEO) database using BioJupies, GREIN, Geo2R, and Correlation Engine.<\/p>\n<p><strong><span style=\"color: #a46832\">Target Audience:<\/span><\/strong><\/p>\n<p>Experimental biologists seeking to analyze gene lists through omics experiments. The software covered in the workshop operates through a user-friendly, point-and-click graphical user interface, so neither programming experience nor familiarity with the command-line interface is required.<\/p>\n<p><a href=\"http:\/\/files.hsls.pitt.edu\/files\/molbio\/MolbioWorkshops.pdf\">HSLS Winter\/Spring 2021 MolBio Info Service Training Workshops schedule<\/a><\/p>\n<p><a href=\"https:\/\/www.hsls.pitt.edu\/ask-a-molbio-specialist\">Contact<\/a> the <a href=\"http:\/\/www.hsls.pitt.edu\/molbio\">HSLS Molecular Biology Information Service<\/a> with any questions.<\/p>\n<p>(Photo by <a href=\"https:\/\/unsplash.com\/@kctinman?utm_source=unsplash&amp;utm_medium=referral&amp;utm_content=creditCopyText\">Shane McLendon<\/a> on <a href=\"\/s\/photos\/mining?utm_source=unsplash&amp;utm_medium=referral&amp;utm_content=creditCopyText\">Unsplash<\/a>)<\/p>\n","protected":false},"excerpt":{"rendered":"<ul>\n<li><strong><span style=\"color: #a46832\">WHAT:<\/span> <\/strong>GEO Data Mining<\/li>\n<li><strong><span style=\"color: #a46832\">WHEN:<\/span> <\/strong>March 31st, 10am-12pm<\/li>\n<li><strong><span style=\"color: #a46832\">WHERE:<\/span> <\/strong>Online; instructions upon registration<\/li>\n<li><strong><span style=\"color: #a46832\">WHO:<\/span> <\/strong>Ansuman Chattopadhyay<\/li>\n<li><strong><span style=\"color: #a46832\">HOW:<\/span> <\/strong>Register <a href=\"https:\/\/www.hsls.pitt.edu\/instruction\/geo-data-mining\/5537\">here<\/a><\/li>\n<\/ul>\n<p><a class=\"read-more\" alt= \"3\/31 wksp: GEO Data Mining\" href=\"https:\/\/info.hsls.pitt.edu\/molbio\/2021\/03\/23\/3-31-wksp-geo-data-mining\/\">Read more&hellip;<\/a><\/p>\n","protected":false},"author":31,"featured_media":4123,"comment_status":"closed","ping_status":"closed","sticky":false,"template":"","format":"standard","meta":{"footnotes":"","_links_to":"","_links_to_target":""},"categories":[1],"tags":[],"class_list":["post-4122","post","type-post","status-publish","format-standard","has-post-thumbnail","hentry","category-uncategorized"],"_links":{"self":[{"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/posts\/4122","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/users\/31"}],"replies":[{"embeddable":true,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/comments?post=4122"}],"version-history":[{"count":2,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/posts\/4122\/revisions"}],"predecessor-version":[{"id":4125,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/posts\/4122\/revisions\/4125"}],"wp:featuredmedia":[{"embeddable":true,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/media\/4123"}],"wp:attachment":[{"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/media?parent=4122"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/categories?post=4122"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/tags?post=4122"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}