This information is over 2 years old. Information was current at time of publication.{"id":3778,"date":"2020-07-31T10:10:38","date_gmt":"2020-07-31T15:10:38","guid":{"rendered":"http:\/\/info.hsls.pitt.edu\/molbio\/?p=3778"},"modified":"2020-10-01T14:42:33","modified_gmt":"2020-10-01T19:42:33","slug":"crowdsourcing-coronavirus-data","status":"publish","type":"post","link":"https:\/\/info.hsls.pitt.edu\/molbio\/2020\/07\/31\/crowdsourcing-coronavirus-data\/","title":{"rendered":"Crowdsourcing Coronavirus Data"},"content":{"rendered":"<h3 class=\"h2\">Collaborative Environment Released for COVID-19 Host Response Research<\/h3>\n<p>As scientists seek to address the COVID-19 pandemic, the study of the human host response to SARS-CoV-2 plays a critical role. Illumina released a new collaborative environment for studying COVID-19 host response, leveraging <a href=\"https:\/\/blog.software.illumina.com\/2020\/07\/08\/accelerating-research-of-sars-cov-2-host-response\/).\"><strong>BaseSpace Correlation Engine (BSCE)<\/strong><\/a>. <!--more-->The resource provides an environment for COVID-19 researchers to put their\u00a0results into context, accelerating discoveries and enabling hypothesis validation around important pathways, biomarkers and potential drug candidate leads, to help address the COVID-19 crisis.<\/p>\n<p><strong>Illumina is making this resource available at no cost <\/strong>to provide the COVID-19 global research community the opportunity to evaluate BSCE in support of efforts to combat the pandemic.<\/p>\n<ul>\n<li>The environment contains the full suite of BSCE tools, combined with several pre-processed data sets from coronavirus animal model systems, as well as recently released human SARS-CoV-2 data.<\/li>\n<li>Additional relevant scientific data will be provided into the resource as it becomes available.<\/li>\n<li>Although sharing data is not a requirement, researchers are encouraged to submit datasets for addition to the community resource, or highlight public datasets that they believe should be added to advance the cause of understanding SARS-CoV-2 host response.<\/li>\n<li>The platform supports results generated from Illumina\u2019s sequencing and array platforms, as well as complementary data from other experimental methodologies.<\/li>\n<li>A variety of datasets can be imported into the BSCE system for correlation analysis, including gene expression, methylation, GWAS, protein interaction and more.<\/li>\n<\/ul>\n<p><strong>The resource will be made available free-of-charge for six months to SARS-CoV-2 researchers, <a href=\"https:\/\/sapac.illumina.com\/products\/by-type\/informatics-products\/basespace-correlation-engine.html#correlation\">here<\/a>. <\/strong><\/p>\n<p>To see examples of how BSCE may be leveraged to better understand SARS-CoV-2 host response, interested researchers can review a <a href=\"https:\/\/www.youtube.com\/playlist?list=PLCQx4mwID7jtl-nDsH-aKktNp_zNV7zle\">series of videos<\/a> created by BSCE users Mike Edwards, Ph.D., Enrique Torchia, Ph.D., and collaborators. Data developed in these videos has been made available in the resource.<\/p>\n<p>(Content from Illumina <a href=\"https:\/\/sapac.illumina.com\/company\/news-center\/feature-articles\/new-covid-19-collaborative-environment-released-to-research-comm.html?langsel=\/my\/\">blog post<\/a> 9 July 2020)<\/p>\n","protected":false},"excerpt":{"rendered":"<p>Collaborative Environment Released for COVID-19 Host Response Research<\/p>\n<p>As scientists seek to address the COVID-19 pandemic, the study of the human host response to SARS-CoV-2 plays a critical role. Illumina released a new collaborative environment for studying COVID-19 host response, leveraging <a href=\"https:\/\/blog.software.illumina.com\/2020\/07\/08\/accelerating-research-of-sars-cov-2-host-response\/).\"><strong>BaseSpace Correlation Engine (BSCE)<\/strong><\/a>.<\/p>\n<p><a class=\"read-more\" alt= \"Crowdsourcing Coronavirus Data\" href=\"https:\/\/info.hsls.pitt.edu\/molbio\/2020\/07\/31\/crowdsourcing-coronavirus-data\/\">Read more&hellip;<\/a><\/p>\n","protected":false},"author":31,"featured_media":3780,"comment_status":"closed","ping_status":"closed","sticky":false,"template":"","format":"standard","meta":{"footnotes":"","_links_to":"","_links_to_target":""},"categories":[1],"tags":[],"class_list":["post-3778","post","type-post","status-publish","format-standard","has-post-thumbnail","hentry","category-uncategorized"],"_links":{"self":[{"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/posts\/3778","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/users\/31"}],"replies":[{"embeddable":true,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/comments?post=3778"}],"version-history":[{"count":5,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/posts\/3778\/revisions"}],"predecessor-version":[{"id":3784,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/posts\/3778\/revisions\/3784"}],"wp:featuredmedia":[{"embeddable":true,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/media\/3780"}],"wp:attachment":[{"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/media?parent=3778"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/categories?post=3778"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/tags?post=3778"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}