This information is over 2 years old. Information was current at time of publication.{"id":3774,"date":"2020-08-06T09:50:32","date_gmt":"2020-08-06T14:50:32","guid":{"rendered":"http:\/\/info.hsls.pitt.edu\/molbio\/?p=3774"},"modified":"2020-08-12T09:17:05","modified_gmt":"2020-08-12T14:17:05","slug":"8-12-wksp-genvar","status":"publish","type":"post","link":"https:\/\/info.hsls.pitt.edu\/molbio\/2020\/08\/06\/8-12-wksp-genvar\/","title":{"rendered":"8\/12 wksp: GenVar"},"content":{"rendered":"<ul>\n<li><strong><span style=\"color: #be943b\">WHAT:<\/span> <\/strong>Genetic Variation<\/li>\n<li><strong><span style=\"color: #be943b\">WHEN:<\/span> <\/strong>August 12th, 10am-12pm &amp; 1-3:30pm<\/li>\n<li><strong><span style=\"color: #be943b\">WHERE:<\/span> <\/strong>Online; instructions upon registration<\/li>\n<li><strong><span style=\"color: #be943b\">WHO:<\/span> <\/strong>Ansuman Chattopahyay &amp; Sri Chaparala<\/li>\n<li><strong><span style=\"color: #be943b\">HOW:<\/span> <\/strong>Register <a href=\"https:\/\/www.hsls.pitt.edu\/instruction\/genetic-variation\/3718\">here<\/a><\/li>\n<\/ul>\n<p><!--more--><\/p>\n<p>This is a 4\u00bd hour workshop. The morning session (<strong>10 am &#8211; 12 pm<\/strong>) provides a brief overview of human genetic variations with the introduction to various genetic variation databases (<a href=\"https:\/\/www.ncbi.nlm.nih.gov\/snp\/\">dbSNP<\/a>, <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/clinvar\/\">ClinVar<\/a>, <a href=\"http:\/\/hsls.libguides.com\/molbio\/hgmd\">HGMD<\/a>, <a href=\"https:\/\/cancer.sanger.ac.uk\/cosmic\">COSMIC<\/a>, <a href=\"http:\/\/www.tumorportal.org\/\">TumorPortal<\/a>, <a href=\"https:\/\/gnomad.broadinstitute.org\/\">gnomAD<\/a>, and <a href=\"https:\/\/regulomedb.org\/regulome-search\/\">RegulomeDb<\/a>).<\/p>\n<p>The afternoon session (<strong>1 pm &#8211; 3:30 pm<\/strong>) covers variant identification using the HSLS-licensed software <a href=\"http:\/\/hsls.libguides.com\/molbio\/clcgenomics\">CLC Genomics Workbench<\/a>, how to use bioinformatics tools for functional analysis of mutations, and open-access web tools such as <a href=\"https:\/\/useast.ensembl.org\/info\/docs\/tools\/vep\/index.html\">Ensembl Variant Effect Predictor<\/a> and <a href=\"http:\/\/wannovar.wglab.org\/\">wANNOVAR<\/a>.<\/p>\n<p><strong><span style=\"color: #be943b\">Hands-On Follow Up:<\/span><\/strong><\/p>\n<p>Every Wednesday after a workshop, a follow up session (<strong>1 pm &#8211; 3 pm<\/strong>) will review the hands-on exercise questions distributed during the workshop. We will not be addressing questions on data analysis for personal research projects\u2014researchers are encouraged to <a href=\"https:\/\/www.hsls.pitt.edu\/ask-a-molbio-specialist\">request a one-on-one consultation with MBIS<\/a> for this type of discussion. Registration is not required for the hands-on follow up session. To attend, use the same Zoom link you receive upon registration for this workshop.<\/p>\n<p><strong><span style=\"color: #be943b\">Target Audience:<\/span><\/strong><\/p>\n<p>Experimental biologists seeking to identify genetic variations from Whole Exome or Whole Genome Sequencing data. The software covered in the workshop operates through a user-friendly, point-and-click graphical user interface, so neither programming experience nor familiarity with the command line interface is required.<\/p>\n<p><strong><span style=\"color: #be943b\">Workshop Requirements:<\/span><\/strong><\/p>\n<ul>\n<li><a href=\"http:\/\/hsls.libguides.com\/molbio\/clcgenomics\">Register for CLC Genomics Workbench<\/a><\/li>\n<\/ul>\n<p><strong><span style=\"color: #be943b\">Workshop Guide:<\/span><\/strong><\/p>\n<ul>\n<li><a href=\"https:\/\/hsls.libguides.com\/MolBioWorkshops\/GenVar\">https:\/\/hsls.libguides.com\/MolBioWorkshops\/GenVar<\/a><\/li>\n<\/ul>\n<p><strong><span style=\"color: #be943b\">Attribution:<\/span><\/strong><\/p>\n<p>Please include the following statement in the acknowledgments section for all publications, posters, and presentations:<strong> Data analysis was performed using {name of software} software licensed through the Molecular Biology Information Service of the Health Sciences Library System, University of Pittsburgh. <\/strong><\/p>\n<p><a href=\"http:\/\/files.hsls.pitt.edu\/files\/molbio\/MolbioWorkshops.pdf\">HSLS Summer 2020 MolBio Info Service Training Workshops schedule<\/a><\/p>\n<p><a href=\"https:\/\/www.hsls.pitt.edu\/ask-a-molbio-specialist\">Contact<\/a> the <a href=\"http:\/\/www.hsls.pitt.edu\/molbio\">HSLS Molecular Biology Information Service<\/a> with any questions.<\/p>\n<p>(Photo by <a href=\"https:\/\/unsplash.com\/@ralics?utm_source=unsplash&amp;utm_medium=referral&amp;utm_content=creditCopyText\">Christopher Rusev<\/a> on <a href=\"https:\/\/unsplash.com\/s\/photos\/different?utm_source=unsplash&amp;utm_medium=referral&amp;utm_content=creditCopyText\">Unsplash<\/a>)<\/p>\n","protected":false},"excerpt":{"rendered":"<ul>\n<li><strong><span style=\"color: #be943b\">WHAT:<\/span> <\/strong>Genetic Variation<\/li>\n<li><strong><span style=\"color: #be943b\">WHEN:<\/span> <\/strong>August 12th, 10am-12pm &amp; 1-3:30pm<\/li>\n<li><strong><span style=\"color: #be943b\">WHERE:<\/span> <\/strong>Online; instructions upon registration<\/li>\n<li><strong><span style=\"color: #be943b\">WHO:<\/span> <\/strong>Ansuman Chattopahyay &amp; Sri Chaparala<\/li>\n<li><strong><span style=\"color: #be943b\">HOW:<\/span> <\/strong>Register <a href=\"https:\/\/www.hsls.pitt.edu\/instruction\/genetic-variation\/3718\">here<\/a><\/li>\n<\/ul>\n<p><a class=\"read-more\" alt= \"8\/12 wksp: GenVar\" href=\"https:\/\/info.hsls.pitt.edu\/molbio\/2020\/08\/06\/8-12-wksp-genvar\/\">Read more&hellip;<\/a><\/p>\n","protected":false},"author":31,"featured_media":3775,"comment_status":"closed","ping_status":"closed","sticky":false,"template":"","format":"standard","meta":{"footnotes":"","_links_to":"","_links_to_target":""},"categories":[1],"tags":[],"class_list":["post-3774","post","type-post","status-publish","format-standard","has-post-thumbnail","hentry","category-uncategorized"],"_links":{"self":[{"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/posts\/3774","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/users\/31"}],"replies":[{"embeddable":true,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/comments?post=3774"}],"version-history":[{"count":3,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/posts\/3774\/revisions"}],"predecessor-version":[{"id":3785,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/posts\/3774\/revisions\/3785"}],"wp:featuredmedia":[{"embeddable":true,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/media\/3775"}],"wp:attachment":[{"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/media?parent=3774"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/categories?post=3774"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/tags?post=3774"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}