This information is over 2 years old. Information was current at time of publication.{"id":375,"date":"2013-05-28T11:43:25","date_gmt":"2013-05-28T16:43:25","guid":{"rendered":"http:\/\/info.hsls.pitt.edu\/molbio\/?p=375"},"modified":"2013-05-28T11:51:01","modified_gmt":"2013-05-28T16:51:01","slug":"introducing-nextbio-enterprise","status":"publish","type":"post","link":"https:\/\/info.hsls.pitt.edu\/molbio\/2013\/05\/28\/introducing-nextbio-enterprise\/","title":{"rendered":"Introducing NextBio Enterprise"},"content":{"rendered":"<p><strong><span style=\"color: blue;font-size: medium\">NextBio Enterprise<\/span><\/strong>, is a web-based platform that aggregates and curates a large collection of genomic data for clinical and research applications.  It supports early-stage and translational discovery to identify mechanisms of disease, drug targets, and prognostic\/predictive biomarkers. <\/p>\n<p>NextBio provides a number of easy to use applications such as:<\/p>\n<ul>\n<li style=\"margin-bottom: 5px\"><b>QuickView:<\/b> provides a quick, top-level view of all the data and information NextBio has about a particular gene, SNP, sequence region, biogroup, bioset, phenotype, tissue, or compound.<\/li>\n<li style=\"margin-bottom: 5px\"><b>Curated Studies:<\/b> lets you browse or query all datasets that you or NextBio have imported.<\/li>\n<li style=\"margin-bottom: 5px\"><b>Body Atlas: <\/b>a unique tool that you can use to find normalized gene expression across all tissues, cell types, cell lines, and stem cells in the NextBio library.<\/li>\n<li style=\"margin-bottom: 5px\"><b>Genetic Markers:<\/b> finds genes and SNPs significantly correlated to a phenotype or compound.<\/li>\n<li style=\"margin-bottom: 5px\"><b>Disease Atlas:<\/b> finds diseases, traits, conditions, and surrogate endpoints associated with a gene, sequence region, SNP, biogroup, or bioset. <\/li>\n<li style=\"margin-bottom: 5px\"><b>Pharmaco Atlas:<\/b> finds compounds and treatments significantly correlated to a gene, sequence region, biogroup, or bioset. <\/li>\n<li style=\"margin-bottom: 5px\"><b>Knockdown Atlas:<\/b> finds genes whose perturbation affects your query term.<\/li>\n<li style=\"margin-bottom: 5px\"><b>Biogroups:<\/b> shows biogroups for which your queried bioset, phenotype or compound is highly enriched. <\/li>\n<li style=\"margin-bottom: 5px\"><b>Genome Browser:<\/b> use to view the physical relationships across biosets and different types of genomic elements.<\/li>\n<li style=\"margin-bottom: 5px\"><b>Literature:<\/b> shows a list of PubMed publications that match your query term.<\/li>\n<li style=\"margin-bottom: 5px\"><b>Clinical Trials: <\/b>shows all clinical trials from ClinicalTrials.gov that match your query term<\/li>\n<li style=\"margin-bottom: 5px\"><b>Meta-Analysis: <\/b>enables users to query with a collection of individual biosets to derive a consensus gene signature and\/or discover sets of commonly regulated biogroups.<\/li>\n<\/ul>\n<p>Please <a href=\"http:\/\/www.hsls.pitt.edu\/molbio\/nextbio\/register\"><b>register here<\/b><\/a> to receive access instructions.<\/p>\n","protected":false},"excerpt":{"rendered":"<p><strong><span style=\"color: blue;font-size: medium\">NextBio Enterprise<\/span><\/strong>, is a web-based platform that aggregates and curates a large collection of genomic data for clinical and research applications.  It supports early-stage and translational discovery to identify mechanisms of disease, drug targets, and prognostic\/predictive biomarkers.<\/p>\n<p><a class=\"read-more\" alt= \"Introducing NextBio Enterprise\" href=\"https:\/\/info.hsls.pitt.edu\/molbio\/2013\/05\/28\/introducing-nextbio-enterprise\/\">Read more&hellip;<\/a><\/p>\n","protected":false},"author":31,"featured_media":0,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"footnotes":"","_links_to":"","_links_to_target":""},"categories":[12],"tags":[],"class_list":["post-375","post","type-post","status-publish","format-standard","hentry","category-tools"],"_links":{"self":[{"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/posts\/375","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/users\/31"}],"replies":[{"embeddable":true,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/comments?post=375"}],"version-history":[{"count":12,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/posts\/375\/revisions"}],"predecessor-version":[{"id":404,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/posts\/375\/revisions\/404"}],"wp:attachment":[{"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/media?parent=375"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/categories?post=375"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/tags?post=375"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}