This information is over 2 years old. Information was current at time of publication.{"id":3746,"date":"2020-07-07T12:14:08","date_gmt":"2020-07-07T17:14:08","guid":{"rendered":"http:\/\/info.hsls.pitt.edu\/molbio\/?p=3746"},"modified":"2020-07-31T09:19:53","modified_gmt":"2020-07-31T14:19:53","slug":"7-28-class-command-line-basics","status":"publish","type":"post","link":"https:\/\/info.hsls.pitt.edu\/molbio\/2020\/07\/07\/7-28-class-command-line-basics\/","title":{"rendered":"7\/28 class: Command Line Basics"},"content":{"rendered":"<ul>\n<li><strong><span style=\"color: #02c0a2\">WHAT:<\/span> <\/strong>Command Line Basics<\/li>\n<li><strong><span style=\"color: #02c0a2\">WHEN:<\/span> <\/strong>July 28th, 10am-12pm<\/li>\n<li><strong><span style=\"color: #02c0a2\">WHERE:<\/span> <\/strong>Online; instructions upon registration<\/li>\n<li><strong><span style=\"color: #02c0a2\">WHO:<\/span> <\/strong>Sri Chaparala &amp; Carrie Iwema<\/li>\n<li><strong><span style=\"color: #02c0a2\">HOW:<\/span> <\/strong>Register <a href=\"https:\/\/www.hsls.pitt.edu\/instruction\/command-line-basics\/4107\">here<\/a><\/li>\n<\/ul>\n<p><!--more--><br \/>\nThis class will teach basic command line skills to (1) access the Center for Research Computing (CRC) high throughput computing cluster via the Unix shell, (2) create and manage directories, (3) edit files using text editor, (4) download FASTQ files using FTP and run FastQC software, and (5) access other CRC-installed open source bioinformatics software such as Bowtie, STAR, HISAT, and MACS.<\/p>\n<p><strong><span style=\"color: #02c0a2\">You must sign up for a Center for Research Computing <a href=\"https:\/\/crc.pitt.edu\/apply\/\">HPC allocation<\/a><\/span>.<\/strong><\/p>\n<p>This workshop is based on the <a href=\"http:\/\/swcarpentry.github.io\/shell-novice\/\">Software Carpentry Lesson on the Unix Shell<\/a>.<\/p>\n<p>(Photo by <a href=\"https:\/\/unsplash.com\/@ikukevk?utm_source=unsplash&amp;utm_medium=referral&amp;utm_content=creditCopyText\">Kevin Ku<\/a> on <a href=\"https:\/\/unsplash.com\/s\/photos\/coding?utm_source=unsplash&amp;utm_medium=referral&amp;utm_content=creditCopyText\">Unsplash<\/a>)<\/p>\n","protected":false},"excerpt":{"rendered":"<ul>\n<li><strong><span style=\"color: #02c0a2\">WHAT:<\/span> <\/strong>Command Line Basics<\/li>\n<li><strong><span style=\"color: #02c0a2\">WHEN:<\/span> <\/strong>July 28th, 10am-12pm<\/li>\n<li><strong><span style=\"color: #02c0a2\">WHERE:<\/span> <\/strong>Online; instructions upon registration<\/li>\n<li><strong><span style=\"color: #02c0a2\">WHO:<\/span> <\/strong>Sri Chaparala &amp; Carrie Iwema<\/li>\n<li><strong><span style=\"color: #02c0a2\">HOW:<\/span> <\/strong>Register <a href=\"https:\/\/www.hsls.pitt.edu\/instruction\/command-line-basics\/4107\">here<\/a><\/li>\n<\/ul>\n<p><a class=\"read-more\" alt= \"7\/28 class: Command Line Basics\" href=\"https:\/\/info.hsls.pitt.edu\/molbio\/2020\/07\/07\/7-28-class-command-line-basics\/\">Read more&hellip;<\/a><\/p>\n","protected":false},"author":31,"featured_media":3749,"comment_status":"closed","ping_status":"closed","sticky":false,"template":"","format":"standard","meta":{"footnotes":"","_links_to":"","_links_to_target":""},"categories":[1],"tags":[],"class_list":["post-3746","post","type-post","status-publish","format-standard","has-post-thumbnail","hentry","category-uncategorized"],"_links":{"self":[{"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/posts\/3746","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/users\/31"}],"replies":[{"embeddable":true,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/comments?post=3746"}],"version-history":[{"count":3,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/posts\/3746\/revisions"}],"predecessor-version":[{"id":3751,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/posts\/3746\/revisions\/3751"}],"wp:featuredmedia":[{"embeddable":true,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/media\/3749"}],"wp:attachment":[{"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/media?parent=3746"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/categories?post=3746"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/tags?post=3746"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}