This information is over 2 years old. Information was current at time of publication.{"id":3221,"date":"2019-06-06T16:01:21","date_gmt":"2019-06-06T21:01:21","guid":{"rendered":"http:\/\/info.hsls.pitt.edu\/molbio\/?p=3221"},"modified":"2019-06-27T12:00:18","modified_gmt":"2019-06-27T17:00:18","slug":"6-26-wksp-bulk-rna-seq","status":"publish","type":"post","link":"https:\/\/info.hsls.pitt.edu\/molbio\/2019\/06\/06\/6-26-wksp-bulk-rna-seq\/","title":{"rendered":"6\/26 wksp: Bulk RNA-Seq"},"content":{"rendered":"<ul>\n<li><strong><span style=\"color: #ffb860\">WHAT:<\/span> <\/strong>Bulk RNA-Seq<\/li>\n<li><strong><span style=\"color: #ffb860\">WHEN:<\/span> <\/strong>June 26th, 1-4 pm<\/li>\n<li><strong><span style=\"color: #ffb860\">WHERE:<\/span> <\/strong>Scaife Hall, Falk Library, Classroom 2<\/li>\n<li><strong><span style=\"color: #ffb860\">WHO:<\/span> <\/strong>Ansuman Chattopahyay<\/li>\n<li><strong><span style=\"color: #ffb860\">HOW:<\/span> <\/strong>Register <a href=\"https:\/\/www.hsls.pitt.edu\/instruction\/bulk-rna-seq\/354\">here<\/a><\/li>\n<\/ul>\n<p><!--more-->Workshop Guide: <a href=\"https:\/\/hsls.libguides.com\/MolBioWorkshops\/BulkRNAseqCLC\">https:\/\/hsls.libguides.com\/MolBioWorkshops\/BulkRNAseqCLC<\/a><\/p>\n<p>Please register for <a href=\"http:\/\/hsls.libguides.com\/molbio\/clcgenomics\">CLC Genomics Workbench<\/a>.<\/p>\n<p>You must also sign up for a Center for Research Computing <a href=\"https:\/\/crc.pitt.edu\/apply\/\">HPC allocation<\/a> and mention your intention to attend the HSLS-offered CLC Genomics Workbench workshop on Bulk RNA-Seq.<\/p>\n<p>This 3-hour hands-on workshop is an introduction to RNA-Seq analysis using the library-licensed CLC Genomics Workbench. Learn how to: <\/p>\n<ul>\n<li>import reads from an NCBI GEO dataset (GSE52778)<\/li>\n<li>align RNA-Seq data to a reference genome<\/li>\n<li>calculate known genes and transcript expressions<\/li>\n<li>perform differential expression analysis<\/li>\n<\/ul>\n<p>Please <a href=\"https:\/\/www.hsls.pitt.edu\/ask-a-molbio-specialist\">contact<\/a> the <a href=\"http:\/\/www.hsls.pitt.edu\/molbio\">HSLS Molecular Biology Information Service<\/a> with any questions.<\/p>\n","protected":false},"excerpt":{"rendered":"<ul>\n<li><strong><span style=\"color: #ffb860\">WHAT:<\/span> <\/strong>Bulk RNA-Seq<\/li>\n<li><strong><span style=\"color: #ffb860\">WHEN:<\/span> <\/strong>June 26th, 1-4 pm<\/li>\n<li><strong><span style=\"color: #ffb860\">WHERE:<\/span> <\/strong>Scaife Hall, Falk Library, Classroom 2<\/li>\n<li><strong><span style=\"color: #ffb860\">WHO:<\/span> <\/strong>Ansuman Chattopahyay<\/li>\n<li><strong><span style=\"color: #ffb860\">HOW:<\/span> <\/strong>Register <a href=\"https:\/\/www.hsls.pitt.edu\/instruction\/bulk-rna-seq\/354\">here<\/a><\/li>\n<\/ul>\n<p><a class=\"read-more\" alt= \"6\/26 wksp: Bulk RNA-Seq\" href=\"https:\/\/info.hsls.pitt.edu\/molbio\/2019\/06\/06\/6-26-wksp-bulk-rna-seq\/\">Read more&hellip;<\/a><\/p>\n","protected":false},"author":31,"featured_media":0,"comment_status":"closed","ping_status":"closed","sticky":false,"template":"","format":"standard","meta":{"footnotes":"","_links_to":"","_links_to_target":""},"categories":[1],"tags":[],"class_list":["post-3221","post","type-post","status-publish","format-standard","hentry","category-uncategorized"],"_links":{"self":[{"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/posts\/3221","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/users\/31"}],"replies":[{"embeddable":true,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/comments?post=3221"}],"version-history":[{"count":1,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/posts\/3221\/revisions"}],"predecessor-version":[{"id":3222,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/posts\/3221\/revisions\/3222"}],"wp:attachment":[{"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/media?parent=3221"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/categories?post=3221"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/tags?post=3221"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}