This information is over 2 years old. Information was current at time of publication.{"id":2899,"date":"2018-09-03T13:42:06","date_gmt":"2018-09-03T18:42:06","guid":{"rendered":"http:\/\/info.hsls.pitt.edu\/molbio\/?p=2899"},"modified":"2018-09-27T09:27:23","modified_gmt":"2018-09-27T14:27:23","slug":"926-wksp-variant-detection","status":"publish","type":"post","link":"https:\/\/info.hsls.pitt.edu\/molbio\/2018\/09\/03\/926-wksp-variant-detection\/","title":{"rendered":"9\/26 wksp: Variant Detection"},"content":{"rendered":"<ul>\n<li><strong><span style=\"color: forestgreen\">WHAT:<\/span> <\/strong>Variant Detection &amp; Analysis: CLC Genomics &amp; IVA<\/li>\n<li><strong><span style=\"color: forestgreen\">WHEN:<\/span> <\/strong>September 26th, 1-4 pm<\/li>\n<li><strong><span style=\"color: forestgreen\">WHERE:<\/span> <\/strong>Scaife Hall, Falk Library, Classroom 2<\/li>\n<li><strong><span style=\"color: forestgreen\">WHO:<\/span> <\/strong>Ansuman Chattopadhyay, PhD<\/li>\n<li><strong><span style=\"color: forestgreen\">HOW:<\/span> <\/strong>Register <a href=\"https:\/\/www.hsls.pitt.edu\/instruction\/variant-detection-analysis-clc-genomics-iva\/352\">here<\/a><\/li>\n<\/ul>\n<p>This hands-on workshop focuses on human genetic variations and cancer mutations. It covers identification of variants using CLC Genomics Workbench software and introduces variation databases (dbSNP, ClinVar, OMIM, DGV, PheGenI, HGMD, Correlation Engine, COSMIC, Broad Tumor Portal, gnomAD Browser, RegulomeDb). The workshop teaches how to use bioinformatics tools for functional analysis of mutations and covers web tools such as EBI Variant Effect Predictor, Ingenuity Variant Analysis (IVA), and PredictSNP2.<\/p>\n<p>Workshop Guide: <a href=\"http:\/\/hsls.libguides.com\/variations\">http:\/\/hsls.libguides.com\/variations<\/a> <\/p>\n<p>Please register for the following tools: <a href=\"http:\/\/hsls.libguides.com\/molbio\/clcgenomics\">CLC Genomics Workbench<\/a>, <a href=\"http:\/\/hsls.libguides.com\/molbio\/biomedgen\">Biomedical Genomics Workbench<\/a>, and <a href=\"http:\/\/hsls.libguides.com\/molbio\/iva\">IVA<\/a>.<\/p>\n<p>You must also sign up for a Center for Research Computing <a href=\"http:\/\/core.sam.pitt.edu\/apply\">HPC allocation<\/a> and mention your intention to attend the HSLS-offered workshop on Variant Detection.<\/p>\n<p>This class is approved for AMA Category 2 CME credit.<\/p>\n<p><a href=\"http:\/\/files.hsls.pitt.edu\/files\/molbio\/MolbioWorkshops.pdf\">HSLS Fall 2018 MolBio Info Service Training Workshops schedule<\/a><\/p>\n","protected":false},"excerpt":{"rendered":"<ul>\n<li><strong><span style=\"color: forestgreen\">WHAT:<\/span> <\/strong>Variant Detection &amp; Analysis: CLC Genomics &amp; IVA<\/li>\n<li><strong><span style=\"color: forestgreen\">WHEN:<\/span> <\/strong>September 26th, 1-4 pm<\/li>\n<li><strong><span style=\"color: forestgreen\">WHERE:<\/span> <\/strong>Scaife Hall, Falk Library, Classroom 2<\/li>\n<li><strong><span style=\"color: forestgreen\">WHO:<\/span> <\/strong>Ansuman Chattopadhyay, PhD<\/li>\n<li><strong><span style=\"color: forestgreen\">HOW:<\/span> <\/strong>Register <a href=\"https:\/\/www.hsls.pitt.edu\/instruction\/variant-detection-analysis-clc-genomics-iva\/352\">here<\/a><\/li>\n<\/ul>\n<p>This hands-on workshop focuses on human genetic variations and cancer mutations.<\/p>\n<p><a class=\"read-more\" alt= \"9\/26 wksp: Variant Detection\" href=\"https:\/\/info.hsls.pitt.edu\/molbio\/2018\/09\/03\/926-wksp-variant-detection\/\">Read more&hellip;<\/a><\/p>\n","protected":false},"author":31,"featured_media":0,"comment_status":"closed","ping_status":"closed","sticky":false,"template":"","format":"standard","meta":{"footnotes":"","_links_to":"","_links_to_target":""},"categories":[1],"tags":[],"class_list":["post-2899","post","type-post","status-publish","format-standard","hentry","category-uncategorized"],"_links":{"self":[{"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/posts\/2899","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/users\/31"}],"replies":[{"embeddable":true,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/comments?post=2899"}],"version-history":[{"count":4,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/posts\/2899\/revisions"}],"predecessor-version":[{"id":2906,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/posts\/2899\/revisions\/2906"}],"wp:attachment":[{"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/media?parent=2899"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/categories?post=2899"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/tags?post=2899"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}