This information is over 2 years old. Information was current at time of publication.{"id":2424,"date":"2017-11-10T11:46:07","date_gmt":"2017-11-10T16:46:07","guid":{"rendered":"http:\/\/info.hsls.pitt.edu\/molbio\/?p=2424"},"modified":"2017-11-10T11:51:17","modified_gmt":"2017-11-10T16:51:17","slug":"1115-wksp-chip-seq","status":"publish","type":"post","link":"https:\/\/info.hsls.pitt.edu\/molbio\/2017\/11\/10\/1115-wksp-chip-seq\/","title":{"rendered":"11\/15 wksp: ChIP-seq"},"content":{"rendered":"<p><strong><span style=\"color: maroon\">You MUST register for ALL of the following:<\/li>\n<p><\/strong><\/p>\n<ul>\n<li><a href=\"http:\/\/www.hsls.pitt.edu\/class\/desc\/molecular-biology\/chromatin-profile-chip-seqatac-seq-analysis-clc-genomics-workbench\/1524\">TO ATTEND THE WORKSHOP<\/a><\/li>\n<li><a href=\"http:\/\/core.sam.pitt.edu\/apply\">Center for Research Computing HPC allocation<\/a> <\/li>\n<li><a href=\"http:\/\/www.hsls.pitt.edu\/molbio\/software_registration\">CLC Genomics Workbench<\/a> <\/li>\n<\/ul>\n<li>\n<strong><span style=\"color: gold\">WHEN:<\/span> <\/strong>November 15th, 1-4 pm<\/li>\n<li><strong><span style=\"color: gold\">WHERE:<\/span> <\/strong>Falk Library, Classroom 2<\/li>\n<li><strong><span style=\"color: gold\">WHO:<\/span> <\/strong>Ansuman Chattopadhyay, PhD<\/li>\n<p>This hands-on workshop will provide an introduction to chromatin profile (ATAC-seq\/ChIP-seq) analysis using the library-licensed CLC Genomics Workbench. Participants will learn how to (1) import NGS reads from an NCBI GEO dataset (GSE95339), (2) map the reads to a reference genome, (3) call peaks, and (4) visualize the results.<\/p>\n<p><a href=\"http:\/\/files.hsls.pitt.edu\/files\/molbio\/MolbioWorkshops.pdf\">HSLS Fall 2017 MolBio Info Service Training Workshops schedule<\/a><\/p>\n<p>Please <a href=\"http:\/\/www.hsls.pitt.edu\/molbio\/askmolbio\">contact<\/a> the <a href=\"http:\/\/www.hsls.pitt.edu\/molbio\">HSLS Molecular Biology Information Service<\/a> with any questions.<\/p>\n","protected":false},"excerpt":{"rendered":"<p><strong><span style=\"color: maroon\">You MUST register for ALL of the following:<\/p>\n<p><\/span><\/strong><\/p>\n<ul>\n<li><a href=\"http:\/\/www.hsls.pitt.edu\/class\/desc\/molecular-biology\/chromatin-profile-chip-seqatac-seq-analysis-clc-genomics-workbench\/1524\">TO ATTEND THE WORKSHOP<\/a><\/li>\n<li><a href=\"http:\/\/core.sam.pitt.edu\/apply\">Center for Research Computing HPC allocation<\/a> <\/li>\n<li><a href=\"http:\/\/www.hsls.pitt.edu\/molbio\/software_registration\">CLC Genomics Workbench<\/a> <\/li>\n<\/ul>\n<li>\n<strong><span style=\"color: gold\">WHEN:<\/span> <\/strong>November 15th, 1-4 pm<\/li>\n<li><strong><span style=\"color: gold\">WHERE:<\/span> <\/strong>Falk Library, Classroom 2<\/li>\n<li><strong><span style=\"color: gold\">WHO:<\/span> <\/strong>Ansuman Chattopadhyay, PhD<\/li>\n<p>This hands-on workshop will provide an introduction to chromatin profile (ATAC-seq\/ChIP-seq) analysis using the library-licensed CLC Genomics Workbench.<\/p>\n<p><a class=\"read-more\" alt= \"11\/15 wksp: ChIP-seq\" href=\"https:\/\/info.hsls.pitt.edu\/molbio\/2017\/11\/10\/1115-wksp-chip-seq\/\">Read more&hellip;<\/a><\/p>\n","protected":false},"author":31,"featured_media":0,"comment_status":"closed","ping_status":"closed","sticky":false,"template":"","format":"standard","meta":{"footnotes":"","_links_to":"","_links_to_target":""},"categories":[13],"tags":[],"class_list":["post-2424","post","type-post","status-publish","format-standard","hentry","category-workshops"],"_links":{"self":[{"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/posts\/2424","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/users\/31"}],"replies":[{"embeddable":true,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/comments?post=2424"}],"version-history":[{"count":2,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/posts\/2424\/revisions"}],"predecessor-version":[{"id":2426,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/posts\/2424\/revisions\/2426"}],"wp:attachment":[{"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/media?parent=2424"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/categories?post=2424"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/tags?post=2424"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}