This information is over 2 years old. Information was current at time of publication.{"id":241,"date":"2013-04-08T11:57:09","date_gmt":"2013-04-08T16:57:09","guid":{"rendered":"http:\/\/info.hsls.pitt.edu\/molbio\/?p=241"},"modified":"2013-04-08T11:58:22","modified_gmt":"2013-04-08T16:58:22","slug":"2-day-partek-workshop","status":"publish","type":"post","link":"https:\/\/info.hsls.pitt.edu\/molbio\/2013\/04\/08\/2-day-partek-workshop\/","title":{"rendered":"2-Day Partek Workshop"},"content":{"rendered":"<p><strong><span style=\"color: blue;font-size: medium\">Powerful and Complete Solution for your NGS &amp; Microarray Data Analysis!<\/span><\/strong><br \/>\nPartek will be hosting a two day Seminar\/Workshop with HSLS MolBio in Falk Library&#8211;Classroom 2 on <strong><span style=\"color: red\">April 18 &amp; 19<\/span><\/strong>, using their Start-to-Finish Next Generation Sequencing and Microarray data analysis software. <\/p>\n<p>The sessions will be led by Dr. Jean Jasinski, Field Application Scientist at Partek, Inc.<\/p>\n<p><a href=\"http:\/\/info.hsls.pitt.edu\/molbio\/files\/2013\/04\/Partek-logo_0.png\"><img loading=\"lazy\" decoding=\"async\" class=\" wp-image-131 alignright\" alt=\"partek\" src=\"http:\/\/info.hsls.pitt.edu\/molbio\/files\/2013\/04\/Partek-logo_0.png\" width=\"164\" height=\"188\" \/><\/a><\/p>\n<p>During this workshop, you will learn how to:<\/p>\n<ul>\n<li>Get started with NGS data analysis including: Alignment, QA\/QC, Downstream Analysis, etc.<\/li>\n<li>Overcome common analysis challenges for NGS and Microarray data analysis<\/li>\n<li>Gain hands-on practice with their software solution using your own data<\/li>\n<\/ul>\n<p><strong><span style=\"color: red\">Please note: registration is required due to limited space. To register or for more information about the workshop, please email Dr. Carrie Iwema @ <a href=\"mailto:iwema@pitt.edu\">iwema@pitt.edu<\/a>.<\/span><\/strong><\/p>\n<p><strong><span style=\"color: blue;font-size: medium\">Agenda:<\/span><\/strong><\/p>\n<p><strong>Thursday Morning, April 18, 2013, 9:30am \u2013 12:00pm (Lecture)<br \/>\nOverview on features of Partek solution<\/strong><\/p>\n<ul>\n<li>Overview: Partek Genomics Suite, Partek Pathway, and Partek Flow (New features, Updates, Improvements)<\/li>\n<li>Introduction to Microarray and NGS Data Analysis<\/li>\n<\/ul>\n<p><strong>Thursday Afternoon, April 18, 2013, 1:00pm \u2013 4:30pm (Lecture &amp; Hands On)<br \/>\nRNA-Seq, DNA-Seq Data Analysis<\/strong><\/p>\n<ul>\n<li>Align NGS raw reads to reference genome<\/li>\n<li>Perform QA\/QC, trimming and filtering reads<\/li>\n<li>Quantify aligned reads to transcriptome<\/li>\n<li>Detect differentially expressed gene using Gene Specific Analysis method<\/li>\n<li>Detect SNPs and Indels<\/li>\n<li>Annotation SNPs with different database including functional effects<\/li>\n<li>Biological interpretation<\/li>\n<\/ul>\n<p><strong>Friday Morning, April 19, 2013, 9:30am \u2013 12:00pm (Lecture &amp; Hands On)<br \/>\nGene Expression, miRNA Data Analysis<\/strong><\/p>\n<ul>\n<li>Detect differential expressed gene\/miRNA<\/li>\n<li>Integrate miRNA with mRNA data analysis<\/li>\n<li>Explore the underlying biology of results<\/li>\n<li>Visualize data and results<\/li>\n<li>Hands-on Practices<\/li>\n<\/ul>\n<p><strong>Friday Afternoon, April 19, 2013, 1:00pm \u2013 4:00pm (Open Lab)<br \/>\n<span style=\"color: red\">BRING YOUR OWN DATA!<\/span><\/strong><\/p>\n","protected":false},"excerpt":{"rendered":"<p><strong><span style=\"color: blue;font-size: medium\">Powerful and Complete Solution for your NGS &amp; Microarray Data Analysis!<\/span><\/strong><br \/>\nPartek will be hosting a two day Seminar\/Workshop with HSLS MolBio in Falk Library&#8211;Classroom 2 on <strong><span style=\"color: red\">April 18 &amp; 19<\/span><\/strong>, using their Start-to-Finish Next Generation Sequencing and Microarray data analysis software.<\/p>\n<p><a class=\"read-more\" alt= \"2-Day Partek Workshop\" href=\"https:\/\/info.hsls.pitt.edu\/molbio\/2013\/04\/08\/2-day-partek-workshop\/\">Read more&hellip;<\/a><\/p>\n","protected":false},"author":31,"featured_media":0,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"footnotes":"","_links_to":"","_links_to_target":""},"categories":[14],"tags":[],"class_list":["post-241","post","type-post","status-publish","format-standard","hentry","category-interesting"],"_links":{"self":[{"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/posts\/241","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/users\/31"}],"replies":[{"embeddable":true,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/comments?post=241"}],"version-history":[{"count":40,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/posts\/241\/revisions"}],"predecessor-version":[{"id":284,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/posts\/241\/revisions\/284"}],"wp:attachment":[{"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/media?parent=241"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/categories?post=241"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/tags?post=241"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}