This information is over 2 years old. Information was current at time of publication.{"id":1154,"date":"2014-11-07T09:58:37","date_gmt":"2014-11-07T14:58:37","guid":{"rendered":"http:\/\/info.hsls.pitt.edu\/molbio\/?p=1154"},"modified":"2014-11-07T09:58:31","modified_gmt":"2014-11-07T14:58:31","slug":"ipa-workshop-on-11122014","status":"publish","type":"post","link":"https:\/\/info.hsls.pitt.edu\/molbio\/2014\/11\/07\/ipa-workshop-on-11122014\/","title":{"rendered":"IPA Workshop"},"content":{"rendered":"<p><strong><span style=\"color: red;font-size: medium\"><big>Ingenuity Pathway Analysis<\/big><\/span><\/strong><br \/>\n<strong><span style=\"font-size: medium\">**special Vendor training session**<br \/>\n<\/span><\/strong><br \/>\n<strong><span style=\"color: #33cc00;font-size: medium\">Wednesday, 12th November 2014<br \/>\n9am &#8211; 12pm<br \/>\nFalk Library Classroom 2 (upstairs)<\/span><\/strong><\/p>\n<p><strong>**REGISTER FOR IPA <a href=\"http:\/\/hsls.libguides.com\/molbio\/licensedtools\/reg\">HERE<\/a>**<\/strong><\/p>\n<p>This special workshop will replace the workshops on Pathway Analysis Tools originally scheduled for 1-3 pm on 11\/5\/2014 and 11\/12\/2014. <\/p>\n<p><strong><span style=\"color: red\">9-9:15 am:<\/span><\/strong> <\/p>\n<ul>\n<li>What is IPA?<\/li>\n<\/ul>\n<ul>\n<li>Why use IPA?<\/li>\n<\/ul>\n<ul>\n<li>Ingenuity Knowledge Base<\/li>\n<\/ul>\n<p><strong><span style=\"color: red\">9:45-10:45 am:<\/span><\/strong><br \/>\nUse the Search &amp; Explore interface to access IPA\u2019s Knowledge Base for deep investigation of any gene, protein, or metabolite and how to further refine gene sets isolated from large-scale data analyses.  <\/p>\n<ul>\n<li>Search for a Gene\/Chemical\/function and drug<\/li>\n<li>Use Build and Overlay tools to construct pathways based on published experimental evidence<\/li>\n<li>Performing an Advanced Search: Limiting results to a molecule type, family or subcellular location<\/li>\n<li>Add molecules from search results to a pathway\n<\/li>\n<li>Use the MAP tool to run in silico simulation based on your curated Knowledge Base relationships\n<\/li>\n<\/ul>\n<p><strong><span style=\"color: red\">10:45-11:45 am:<\/span><\/strong><br \/>\nUsing an example gene expression dataset the basic to intermediate IPA functionalities will be covered. <\/p>\n<ul>\n<li>Upload single and multiple observation datasets<\/li>\n<li>Find and interpret the direction and biological effect of your expression data<\/li>\n<li>Find and interpret the most relevant canonical pathways and predict pathways effects<\/li>\n<li>Identify predicted upstream regulators (transcription factors, miRNA, receptors, drugs, etc.) <\/li>\n<li>Understand the basics of the Network generation algorithm and how to interpret the network result<\/li>\n<li>Understand Regular Effects<\/li>\n<\/ul>\n<p><strong><span style=\"color: red\">11:45 am-noon:<\/span><\/strong> <\/p>\n<ul>\n<li>Questions and Answers if time permits<\/li>\n<\/ul>\n<p><a href=\"http:\/\/files.hsls.pitt.edu\/files\/molbio\/MolbioWorkshops.pdf\">HSLS Fall 2014 Bioinformatics Training Workshops schedule<\/a><\/p>\n","protected":false},"excerpt":{"rendered":"<p><strong><span style=\"color: red;font-size: medium\">Ingenuity Pathway Analysis<\/span><\/strong><br \/>\n<strong><span style=\"font-size: medium\">**special Vendor training session**<br \/>\n<\/span><\/strong><br \/>\n<strong><span style=\"color: #33cc00;font-size: medium\">Wednesday, 12th November 2014<br \/>\n9am &#8211; 12pm<br \/>\nFalk Library Classroom 2 (upstairs)<\/span><\/strong><\/p>\n<p><strong>**REGISTER FOR IPA <a href=\"http:\/\/hsls.libguides.com\/molbio\/licensedtools\/reg\">HERE<\/a>**<\/strong><\/p>\n<p>This special workshop will replace the workshops on Pathway Analysis Tools originally scheduled for 1-3 pm on 11\/5\/2014 and 11\/12\/2014.<\/p>\n<p><a class=\"read-more\" alt= \"IPA Workshop\" href=\"https:\/\/info.hsls.pitt.edu\/molbio\/2014\/11\/07\/ipa-workshop-on-11122014\/\">Read more&hellip;<\/a><\/p>\n","protected":false},"author":31,"featured_media":0,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"footnotes":"","_links_to":"","_links_to_target":""},"categories":[13],"tags":[],"class_list":["post-1154","post","type-post","status-publish","format-standard","hentry","category-workshops"],"_links":{"self":[{"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/posts\/1154","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/users\/31"}],"replies":[{"embeddable":true,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/comments?post=1154"}],"version-history":[{"count":21,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/posts\/1154\/revisions"}],"predecessor-version":[{"id":1185,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/posts\/1154\/revisions\/1185"}],"wp:attachment":[{"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/media?parent=1154"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/categories?post=1154"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/info.hsls.pitt.edu\/molbio\/wp-json\/wp\/v2\/tags?post=1154"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}