Wednesday, September 27, 2023, 1-4 p.m.
Hybrid session: Attend online or in person in the Falk Library Classroom
Register for IPA and Correlation Engine
In this engaging workshop, you will learn how to analyze differentially expressed genes (DEG) associated with genome-scale experiments, such as RNA-Seq gene expression studies, and gain mechanistic insights using Ingenuity Pathway Analysis and Correlation Engine software.
Upon completion, you will be able to:
- Retrieve a list of DEGs associated with genome-scale experiments (e.g., “treatment vs. control,” “tumor vs. normal,” or “infected vs. mock”) by searching gene expression data repositories (NCBI GEO)
- Gain mechanistic insights by identifying statistically overrepresented terms (biological functions, molecular processes, diseases, etc.) and pathways present in the DEG list
- Predict upstream causal regulators (transcription factors, miRNA, etc.)
- Retrieve datasets from GEO that exhibit similar or opposite gene expression profiles